Genome-Wide Analysis of the Response of Dickeya dadantii 3937 to Plant Antimicrobial Peptides

Antimicrobial peptides constitute an important factor in the defense of plants against pathogens, and bacterial resistance to these peptides have previously been shown to be an important virulence factor in Dickeya dadantii, the causal agent of soft-rot disease of vegetables. In order to understand the bacterial response to antimicrobial pep- tides, a transcriptional microarray analysis was performed upon treatment with sub-lethal concentration of thionins, a widespread plant peptide. In all, 36 genes were found to be overexpressed, and were classified according to their deduced function as i) transcriptional regulators, ii) transport, and iii) modification of the bacterial membrane. One gene encoding a uricase was found to be repressed. The majority of these genes are known to be under the control of the PhoP/PhoQ system. Five genes representing the different functions induced were selected for further analysis. The results obtained indicate that the presence of antimicrobial peptides induces a complex response which includes peptide-specific elements and general stress-response elements contributing differentially to the virulence in different hosts.

Una base de datos de inventarios de vegetación: HISPAVEG

Las bases de datos de inventarios de vegetación son una importante fuente de información en relación a un conjunto amplio de aspectos del medio natural, entre los que destacan los efectos de la gestión forestal en la diversidad vegetal, los estudios de autoecología basados en modelos de distribución de especies y la observación a largo plazo de las comunidades vegetales. Desde esta valoración esta comunicación presenta HispaVeg, una base de datos de inventarios de vegetación online, abierta y viva, con las siguientes características y resultados: Permite introducir inventarios de vegetación con diversas metodologías (estructural, como la fisionómica-estructural de Ruiz de la Torre y de la escuela de Zurich-Montpelier). En la actualidad contiene 2.663 inventarios históricos del profesor Juan Ruiz de la Torre realizados entre los años 1950 y 2000, de superficie de parcela entre 400 y 3.600 m2, tanto de formaciones arboladas como de matorrales y pastizales, con número medio de especies por inventario de 34 y distribuidos por toda la España peninsular e Islas Baleares, en un intervalo altitudinal entre 0 y 2880 m.

The type II secretion system (Xcp) of Pseudomonas putida is active and involved in the secretion of phosphatases.

The genome of the Gram-negative bacterium Pseudomonas putida harbours a complete set of xcp genes for a type II protein secretion system (T2SS). This study shows that expression of these genes is induced under inorganic phosphate (Pi ) limitation and that the system enables the utilization of various organic phosphate sources. A phosphatase of the PhoX family, previously designated UxpB, was identified, which was produced under low Pi conditions and transported across the cell envelope in an Xcp-dependent manner demonstrating that the xcp genes encode an active T2SS. The signal sequence of UxpB contains a twin-arginine translocation (Tat) motif as well as a lipobox, and both processing by leader peptidase II and Tat dependency were experimentally confirmed. Two different tat gene clusters were detected in the P.?putida genome, of which one, named tat-1, is located adjacent to the uxpB and xcp genes. Both Tat systems appeared to be capable of transporting the UxpB protein. However, expression of the tat-1 genes was strongly induced by low Pi levels, indicating a function of this system in survival during Pi starvation.

Light regulates motility, attachment and virulence in the plant pathogen Pseudomonas syringae pv tomato DC3000.

Pseudomonas syringae pv tomato DC3000 (Pto) is the causal agent of the bacterial speck of tomato, which leads to significant economic losses in this crop. Pto inhabits the tomato phyllosphere, where the pathogen is highly exposed to light, among other environmental factors. Light represents a stressful condition and acts as a source of information associated with different plant defence levels. Here, we analysed the presence of both blue and red light photoreceptors in a group of Pseudomonas. In addition, we studied the effect of white, blue and red light on Pto features related to epiphytic fitness. While white and blue light inhibit motility, bacterial attachment to plant leaves is promoted. Moreover, these phenotypes are altered in a blue-light receptor mutant. These light-controlled changes during the epiphytic stage cause a reduction in virulence, highlighting the relevance of motility during the entry process to the plant apoplast. This study demonstrated the key role of light perception in the Pto phenotype switching and its effect on virulence.

The type II secretion system (Xcp) of Pseudomonas putida is active and involved in the secretion of phosphatases.

The genome of the Gram-negative bacterium Pseudomonas putida harbours a complete set of xcp genes for a type II protein secretion system (T2SS). This study shows that expression of these genes is induced under inorganic phosphate (Pi ) limitation and that the system enables the utilization of various organic phosphate sources. A phosphatase of the PhoX family, previously designated UxpB, was identified, which was produced under low Pi conditions and transported across the cell envelope in an Xcp-dependent manner demonstrating that the xcp genes encode an active T2SS. The signal sequence of UxpB contains a twin-arginine translocation (Tat) motif as well as a lipobox, and both processing by leader peptidase II and Tat dependency were experimentally confirmed. Two different tat gene clusters were detected in the P.?putida genome, of which one, named tat-1, is located adjacent to the uxpB and xcp genes. Both Tat systems appeared to be capable of transporting the UxpB protein. However, expression of the tat-1 genes was strongly induced by low Pi levels, indicating a function of this system in survival during Pi starvation.

Generador de exámenes de test aleatorio

En este documento se detalla, la planificación y elaboración de un paquete que respeta el estándar S4 de programación en lenguaje R. El paquete consiste en una serie de métodos y clases para la generación de exámenes tipos test y soluciones a partir de un archivo xls, que hace las funciones de una base de datos. El diseño propuesto está orientado a objetos y desarrolla un conjunto de clases que representan los contenidos de una prueba de evaluación tipo test: enunciados, peguntas y respuestas. Se ha realizado una implementación sencilla de un prototipo con las funciones básicas necesarias para generar los tests. Además se ha generado la documentación necesaria para crear el paquete, esto significa que cada método tiene una página de ayuda, que se podrá consultar desde un terminal con R, dicha documentación incluye ejemplos de ejecución de cada método.---ABSTRACT---In this document is detailed the elaboration and development of a package that meets the standard S4 of programming language R. This package consists of a group of methods and classes used for the generation of test exams and their solutions starting from a xls format file wich plays the role of a data base at the same time. These classes have been grouped in a way that the user could have a complete and easy vision of them. This division has been done by using data storage and functions whose tasks are more or less the same. Furthermore, the necessary documentation to create this package has also been generated, that means that every method has a help page wich can be called from a R terminal if necessary. This documentation has examples of the execution of every method.

Atlas de Barrios Vulnerables de España: 12 Ciudades 1991/2001/ 2006

El Altas de Barrios Vulnerables de España se basa en los trabajos recogidos en los catálogos “Análisis urbanístico de Barrios Vulnerables” de 1991 y 2001, y su Adenda 2006, realizados gracias al convenio de colaboración entre la Sección de Urbanismo del Instituto Juan de Herrera de la Universidad Politécnica de Madrid (UPM) y el Ministerio de Fomento. En este documento no se recogen los catálogos de los barrios estudiados, que pueden ser consultados on-line, ya que el objetivo es presentar un panorama general sobre la dimensión y evolución de la vulnerabilidad de las ciudades españolas de más de 50.000 habitantes. El marco general se completa con los informes individuales de las 12 ciudades de más de 300.000 habitantes. Los informes individuales contienen el análisis estadístico de la evolución de la vulnerabilidad de cada una de las ciudades con un especial cuidado en su representación cartográfica, que permite al lector un análisis territorial de la vulnerabilidad urbana y la comparación tanto temporal como por tipo de vulnerabilidad. Además, para facilitar la comprensión de los datos analizados, este Atlas se acompaña de un conjunto de anexos en los que se describe la metodología empleada en el trabajo del que se extraen dicho datos, y un glosario de términos básicos para su comprensión.

Exploring new roles for the rpoS gene in the survival and virulence of the fire blight pathogen Erwinia amylovora

Erwinia amylovora causes fire blight in economically important plants of the family Rosaceae. This bacterial pathogen spends part of its life cycle coping with starvation and other fluctuating environmental conditions. In many Gram-negative bacteria, starvation and other stress responses are regulated by the sigma factor RpoS. We obtained an E. amylovora rpoS mutant to explore the role of this gene in starvation responses and its potential implication in other processes not yet studied in this pathogen. Results showed that E. amylovora needs rpoS to develop normal starvation survival and viable but nonculturable (VBNC) responses. Furthermore, this gene contributed to stationary phase cross-protection against oxidative, osmotic, and acid stresses and was essential for cross-protection against heat shock, but nonessential against acid shock. RpoS also mediated regulation of motility, exopolysaccharide synthesis, and virulence in immature loquats, but not in pear plantlets, and contributed to E. amylovora survival in nonhost tissues during incompatible interactions. Our results reveal some unique roles for the rpoS gene in E. amylovora and provide new knowledge on the regulation of different processes related to its ecology, including survival in different environments and virulence in immature fruits.

Estrategias, retos y oportunidades en la rehabilitación de los polígonos de vivienda construidos en España entre 1940 y 1980

Al inicio de este siglo XXI, las ciudades españolas tienen ante sí un reto que, en términos cuantitativos, supera con mucho al referido a la rehabilitación de centros históricos y primeros ensanches. Se trata de la rehabilitación de un tejido específico de nuestras ciudades, los barrios de bloque abierto construidos entre 1940-1980, en los que se están produciendo graves procesos de degradación urbana y que pueden caracterizarse como áreas urbanas vulnerables. Este artículo analiza tanto las estrategias emprendidas desde las diversas administraciones públicas en materia de rehabilitación urbana como las experiencias iniciadas y tiene por objetivos, primero, detectar cuáles son las principales barreras de todo tipo (legales, sociales, económicas, culturales) que impiden que este tipo de prácticas dejen atrás el carácter experimental y minoritario que aun hoy las caracteriza, y, segundo, avanzar propuestas de acción para conseguir la rehabilitación urbana integral y sistemática de estos barrios.

Yield and sugar accumulating capacities of Airén cultivar. A preliminary study

Airén is the most worldwide spread white grape cultivar, high yielding, well adapted to hot, dry conditions, and not very sensitive to fungal diseases. Its largest growing region is La Mancha, where Airén has been traditionally bush trained, spur pruned and grown with no irrigation. However, grape growing has evolved to meet the need for higher yields and harvest mechanization; and modern cultural practices train grape vines to simple multi-wire trellis systems, cane pruned, and usually irrigated. The aim of the present study was to evaluate the yield and sugar accumulating capacities of Airén cultivar with regard to leaf area, and to assess the influence that different yield components have on yield. In 2014, five commercial irrigated vineyards, located in La Mancha, of different ages, and grafted onto different rootstocks were selected for this study. Canopy surface area (SA) was measured at maturity. Berry weight and sugar concentration were measured during ripening on a weekly basis. Yield and yield components were determined at harvest. Values for shoot density ranged 2.3-5.1 shoots/m2; SA, 0.6-1.1 m2/m2; yield, 20-40 t/ha; fertility, 1.1-1.7 bunches/shoot; bunch weight, 450-650 g; berry weight, 2.5-2.9 g; and sugar concentration, 17-21 ºBrix. The number of bunches per shoot was the yield component that had the greatest influence on yield. The number of berries was the main contributing factor to bunch weight. A lineal relationship between SA/yield and sugar concentration was observed, with values of SA/yield ranging from 0.20 to 0.45 m2/kg. A ratio SA/yield of approximately 0.4 m2/kg was needed to reach a value of 20 ºBrix. Hence it would be necessary a SA of 12000 m2/ha, under the conditions of this study, to achieve a 30 t/ha yield, and a sugar concentration of 20 ºBrix. These results are a step forward in the study of the Airén cultivar, being of help for grape growers in the center area of Spain in order to maximize crop yield and sugar accumulation.