Probabilistic reasoning with an enzyme-driven DNA device

We present a biomolecular probabilistic model driven by the action of a DNA toolbox made of a set of DNA templates and enzymes that is able to perform Bayesian inference. The model will take single-stranded DNA as input data, representing the presence or absence of a specific molecular signal (the evidence). The program logic uses different DNA templates and their relative concentration ratios to encode the prior probability of a disease and the conditional probability of a signal given the disease. When the input and program molecules interact, an enzyme-driven cascade of reactions (DNA polymerase extension, nicking and degradation) is triggered, producing a different pair of single-stranded DNA species. Once the system reaches equilibrium, the ratio between the output species will represent the application of Bayes? law: the conditional probability of the disease given the signal. In other words, a qualitative diagnosis plus a quantitative degree of belief in that diagno- sis. Thanks to the inherent amplification capability of this DNA toolbox, the resulting system will be able to to scale up (with longer cascades and thus more input signals) a Bayesian biosensor that we designed previously.

Probabilistic meta-analysis of risk from the exposure to Hg in artisanal gold mining communities in Colombia

Colombia is one of the largest per capita mercury polluters in the world as a consequence of its artisanal gold mining activities. The severity of this problem in terms of potential health effects was evaluated by means of a probabilistic risk assessment carried out in the twelve departments (or provinces) in Colombia with the largest gold production. The two exposure pathways included in the risk assessment were inhalation of elemental Hg vapors and ingestion of fish contaminated with methyl mercury. Exposure parameters for the adult population (especially rates of fish consumption) were obtained from nation-wide surveys and concentrations of Hg in air and of methyl-mercury in fish were gathered from previous scientific studies. Fish consumption varied between departments and ranged from 0 to 0.3 kg d?1. Average concentrations of total mercury in fish (70 data) ranged from 0.026 to 3.3 lg g?1. A total of 550 individual measurements of Hg in workshop air (ranging from menor queDL to 1 mg m?3) and 261 measurements of Hg in outdoor air (ranging from menor queDL to 0.652 mg m?3) were used to generate the probability distributions used as concentration terms in the calculation of risk. All but two of the distributions of Hazard Quotients (HQ) associated with ingestion of Hg-contaminated fish for the twelve regions evaluated presented median values higher than the threshold value of 1 and the 95th percentiles ranged from 4 to 90. In the case of exposure to Hg vapors, minimum values of HQ for the general population exceeded 1 in all the towns included in this study, and the HQs for miner-smelters burning the amalgam is two orders of magnitude higher, reaching values of 200 for the 95th percentile. Even acknowledging the conservative assumptions included in the risk assessment and the uncertainties associated with it, its results clearly reveal the exorbitant levels of risk endured not only by miner-smelters but also by the general population of artisanal gold mining communities in Colombia.

Probabilistic approach for longitudinal ventilation system design in fire situations

The main objective of ventilation systems in tunnels is to reach the highest possible safety level both in service and fire situation; being the fire one, the most relevant when designing the system. When designing a longitudinal ventilation system, the methodology to evaluate the capacity of the system is similar both in service and fire situation, with the exception of the chimney effect and the phenomena of thermal transfer which is responsible or the changes in the density of the air. When facing the dimensioning task for longitudinal ventilated tunnels, although similar methodologies are used in different countries, specific hypothesis (aerodynamic, thermal properties, traffic) even if discussed in the literature or current practice, are not usually detailed in the regulations or recommendations. The aim of this paper is to propose a probabilistic approach to the problem which would allow the designer, and the tunnel owner, to understand the uncertainty and sensibility adopted in the results and, eventually, identify possible ways of optimizing the ventilation solution to be adopted.

A dynamic, probabilistic model for city building

The problem of interdependence between housing and commuting in a city has been analysed within the framework of welfare economics. Uncertain changes overtime in the working population has been considered by means of a dynamic, probabilistic model. The characteristics of irreversibility and durability in city building have been explicitly dealt with. The ultimate objective is that the model after further development will be an auxiliary tool in city planning.

Probabilistic assessment of risk from the exposure to mercury in artisanal gold mining communities in Colombia

Colombia is one the largest per capita mercury polluters as a consequence of its artisanal gold mining operations, which are steadily increasing following the rising price of this metal. Compared to gravimetric separation methods and cyanidation, the concentration of gold using Hg amalgams presents several advantages: the process is less time-consuming and minimizes gold losses, and Hg is easily transported and inexpensive relative to the selling price of gold. Very often, mercury amalgamation is carried out on site by unprotected workers. During this operation large amounts of mercury are discharged to the environment and eventually reach the fresh water bodies in the vicinity where it is subjected to methylation. Additionally, as gold is released from the amalgam by heating on open charcoal furnaces in small workshops, mercury vapors are emitted and inhaled by the artisanal smelters and the general population

A methodology to compute emission projections from road transport (EmiTRANS)

Atmospheric emissions from road transport have increased all around the world during the last decades more rapidly than from other pollution sources. For instance, they contribute to more than 25% of total CO, CO2, NOx, and fine particle emissions in most of the European countries. This situation shows the importance of road transport when complying with emission ceilings and air quality standards applied to these pollutants. This paper presents a modelling system to perform atmospheric emission projections (simultaneously both air quality pollutants and greenhouse gases) from road transport including the development of a tailored software tool (EmiTRANS) as a planning tool. The methodology has been developed with two purposes: 1) to obtain outputs used as inputs to the COPERT4 software to calculate emission projections and 2) to summarize outputs for policy making evaluating the effect of emission abatement measures for a vehicle fleet. This methodology has been applied to the calculation of emission projections in Spain up to 2020 under several scenarios, including a sensitivity analysis useful for a better interpretation and confidence building on the results. This case study demonstrates the EmiTRANS applicability to a country, and points out the need for combining both technical and non-technical measures (such as behavioural changes or demand management) to reduce emissions, indirectly improving air quality and contributing to mitigate climate change.

Integrated deterministic-probabilistic safety assessment methodologies

(ENG) IDPSA (Integrated Deterministic-Probabilistic Safety Assessment) is a family of methods which use tightly coupled probabilistic and deterministic approaches to address respective sources of uncertainties, enabling Risk informed decision making in a consistent manner. The starting point of the IDPSA framework is that safety justification must be based on the coupling of deterministic (consequences) and probabilistic (frequency) considerations to address the mutual interactions between stochastic disturbances (e.g. failures of the equipment, human actions, stochastic physical phenomena) and deterministic response of the plant (i.e. transients). This paper gives a general overview of some IDPSA methods as well as some possible applications to PWR safety analyses (SPA)DPSA (Metodologías Integradas de Análisis Determinista-Probabilista de Seguridad) es un conjunto de métodos que utilizan métodos probabilistas y deterministas estrechamente acoplados para abordar las respectivas fuentes de incertidumbre, permitiendo la toma de decisiones Informada por el Riesgo de forma consistente. El punto de inicio del marco IDPSA es que la justificación de seguridad debe estar basada en el acoplamiento entre consideraciones deterministas (consecuencias) y probabilistas (frecuencia) para abordar la interacción mutua entre perturbaciones estocásticas (como por ejemplo fallos de los equipos, acciones humanas, fenómenos físicos estocásticos) y la respuesta determinista de la planta (como por ejemplo los transitorios). Este artículo da una visión general de algunos métodos IDSPA así como posibles aplicaciones al análisis de seguridad de los PWR.

Quantifying dispersal paths in probabilistic habitat networks: a reply to hock and mumby (2015) and an overview of recent developments and applications

Hock and Mumby (2015) describe an approach to quantify dispersal probabilities along paths in networks of habitat patches. This approach basically consists in determining the most probable (most reliable) path for movement between habitat patches by calculating the product of the dispersal probabilities in each link (step) along the paths in the network. Although the paper by Hock and Mumby (2015) has value and includes interesting analyses (see comments in section 7 below), the approach they describe is not new.

Multi-sensor background subtraction by fusing multiple region-based probabilistic classifiers

In the recent years, the computer vision community has shown great interest on depth-based applications thanks to the performance and flexibility of the new generation of RGB-D imagery. In this paper, we present an efficient background subtraction algorithm based on the fusion of multiple region-based classifiers that processes depth and color data provided by RGB-D cameras. Foreground objects are detected by combining a region-based foreground prediction (based on depth data) with different background models (based on a Mixture of Gaussian algorithm) providing color and depth descriptions of the scene at pixel and region level. The information given by these modules is fused in a mixture of experts fashion to improve the foreground detection accuracy. The main contributions of the paper are the region-based models of both background and foreground, built from the depth and color data. The obtained results using different database sequences demonstrate that the proposed approach leads to a higher detection accuracy with respect to existing state-of-the-art techniques.

Forest products market in Spain 2015: situation and projections

The Spanish economy is slightly showing positive recovery signs. Construction figures and domestic consumption, which are the most relevant market drivers for forest products, are also significantly better than in the last years. This article analyzes the projections for 2015 in several forest products markets. The conclusion is that a certain general improvement can be expected in most of them, though showing different figures and values.

Class-Conditional Probabilistic Principal Component Analysis: application to gender recognition

Este trabajo presenta una solución al problema del reconocimiento del género de un rostro humano a partir de una imagen. Adoptamos una aproximación que utiliza la cara completa a través de la textura de la cara normalizada y redimensionada como entrada a un clasificador Näive Bayes. Presentamos la técnica de Análisis de Componentes Principales Probabilístico Condicionado-a-la-Clase (CC-PPCA) para reducir la dimensionalidad de los vectores de características para la clasificación y asegurar la asunción de independencia para el clasificador. Esta nueva aproximación tiene la deseable propiedad de presentar un modelo paramétrico sencillo para las marginales. Además, este modelo puede estimarse con muy pocos datos. En los experimentos que hemos desarrollados mostramos que CC-PPCA obtiene un 90% de acierto en la clasificación, resultado muy similar al mejor presentado en la literatura---ABSTRACT---This paper presents a solution to the problem of recognizing the gender of a human face from an image. We adopt a holistic approach by using the cropped and normalized texture of the face as input to a Naïve Bayes classifier. First it is introduced the Class-Conditional Probabilistic Principal Component Analysis (CC-PPCA) technique to reduce the dimensionality of the classification attribute vector and enforce the independence assumption of the classifier. This new approach has the desirable property of a simple parametric model for the marginals. Moreover this model can be estimated with very few data. In the experiments conducted we show that using CCPPCA we get 90% classification accuracy, which is similar result to the best in the literature. The proposed method is very simple to train and implement.

A methodology to estimate uncertainty for emission projections through sensitivity analysis

Air pollution abatement policies must be based on quantitative information on current and future emissions of pollutants. As emission projections uncertainties are inevitable and traditional statistical treatments of uncertainty are highly time/resources consuming, a simplified methodology for nonstatistical uncertainty estimation based on sensitivity analysis is presented in this work. The methodology was applied to the “with measures” scenario for Spain, concretely over the 12 highest emitting sectors regarding greenhouse gas and air pollutants emissions. Examples of methodology application for two important sectors (power plants, and agriculture and livestock) are shown and explained in depth. Uncertainty bands were obtained up to 2020 by modifying the driving factors of the 12 selected sectors and the methodology was tested against a recomputed emission trend in a low economic-growth perspective and official figures for 2010, showing a very good performance. Implications: A solid understanding and quantification of uncertainties related to atmospheric emission inventories and projections provide useful information for policy negotiations. However, as many of those uncertainties are irreducible, there is an interest on how they could be managed in order to derive robust policy conclusions. Taking this into account, a method developed to use sensitivity analysis as a source of information to derive nonstatistical uncertainty bands for emission projections is presented and applied to Spain. This method simplifies uncertainty assessment and allows other countries to take advantage of their sensitivity analyses.