Functional, structural and phylogenetic analysis of domains underlying the Al sensitivity of the aluminum-activated malate/anion transporter, TaALMT1.

Triticum aestivum aluminum-activated malate transporter (TaALMT1) is the founding member of a unique gene family of anion transporters (ALMTs) that mediate the efflux of organic acids. A small sub-group of root-localized ALMTs, including TaALMT1, is physiologically associated with in planta aluminum (Al) resistance. TaALMT1 exhibits significant enhancement of transport activity in response to extracellular Al. In this study, we integrated structure–function analyses of structurally altered TaALMT1 proteins expressed in Xenopus oocytes with phylogenic analyses of the ALMT family. Our aim is to re-examine the role of protein domains in terms of their potential involvement in the Al-dependent enhancement (i.e. Al-responsiveness) of TaALMT1 transport activity, as well as the roles of all its 43 negatively charged amino acid residues. Our results indicate that the N-domain, which is predicted to form the conductive pathway, mediates ion transport even in the absence of the C-domain. However, segments in both domains are involved in Al3+ sensing. We identified two regions, one at the N-terminus and a hydrophobic region at the C-terminus, that jointly contribute to the Al-response phenotype. Interestingly, the characteristic motif at the N-terminus appears to be specific for Al-responsive ALMTs. Our study highlights the need to include a comprehensive phylogenetic analysis when drawing inferences from structure–function analyses, as a significant proportion of the functional changes observed for TaALMT1 are most likely the result of alterations in the overall structural integrity of ALMT family proteins rather than modifications of specific sites involved in Al3+ sensing.

Mapas gráficos para la visualización de relaciones en sistemas de recomendación

La presente tesis doctoral tiene como objetivo el diseñar un modelo de inferencia visual y sencillo que permita a los usuarios no registrados en un sistema de recomendación inferir por ellos mismos las recomendaciones a partir de sus gustos. Este modelo estará basado en la representación de las relaciones de similaridad entre los ítems. Estas representaciones visuales (que llamaremos mapas gráficos), nos muestran en que lugar se encuentran los ítems más representativos y que ítems son votados de una manera más parecida en función de los votos emitidos por los usuarios del sistema de recomendación. Los mapas gráficos obtenidos, toman la forma de los árboles filogenéticos (que son árboles que muestran las relaciones evolutivas entre varias especies), que muestran la similitud numérica entre cada par de ítems que se consideran similares. Como caso de estudio se muestran en este trabajo los resultados obtenidos utilizando la base de datos de MovieLens 1M, que contiene 3900 películas (ítems). ABSTRACT The present PhD thesis has the objective of designing a visual and simple inference model that allow users, who are not registered in a recommendation system, to infer by themselves the recommendations from their tastes. This model will be based on the representation of relations of similarity between items. These visual representations (called graphical maps) show us where the most representative items are, and items are voted in a similar way based on the votes cast by users of the recommendation system. The obtained graphs maps take form of phylogenetic trees (which are trees that show the evolutionary relationships among various species), that give you an idea about the numeric similarity between each pair of items that are considered similar. As a case study we provide the results obtained using the public database Movielens 1M, which contains 3900 movies.