Multimodal species abundance distributions: a deconstruction approach reveals the processes behind the pattern

Copyright © 2014 The Authors. Oikos © 2014 Nordic Society Oikos.

Effects of density versus size on grazing by a key exploited herbivore

Fishing decreases the biomass of target species via reduction in the numbers and/or size of individuals. In natural systems, the strength of biological interactions, including predator-prey dynamics, are often density or size-dependent. Hence, changes in the numbers or size of key taxa may be expected to influence biological interactions but their effects do not need to be identical. Here we compare the effects of biomass reduction in populations of the exploited limpet Patella candei. Biomass removal was experimentally achieved by either removing individuals (density reduction) or by replacing large by small individuals (size reduction), while controlling for total limpet biomass in a laboratory-based experiment. At the experiment’s termination, biomass reduction led to proportional changes in area grazed. However, there was no difference whether this was achieved via changes in density or in size. Furthermore, no discernible effects of treatments were evident on different components of the algal assemblage. A field survey also revealed that P. candei biomass explained a greater proportion in variation in the area free of algae than density alone. Our results suggest that loss of biomass in populations of P. candei has quantitatively and qualitatively similar effects on algal cover regardless of whether it is caused by an equivalent (biomass) reduction in the numbers or size of individuals.

Population structure in high shore littorinids: contrast between riprap and rocky shores

World Congress of Malacology, Ponta Delgada, July 22-28, 2013.

Data analysis model selection for estimating local population size of the Risso’s dolphin (Grampus griseus) in the Azores

27th Annual Conference of the European Cetacean Society. Setúbal, Portugal, 8-10 April 2013.

Mapping multi-species habitat use for marine conservation planning

Tese de Doutoramento, Ciências do Mar (Biologia Marinha)

The gambin model provides a superior fit to species abundance distributions with a single free parameter : evidence, implementation and interpretation

The species abundance distribution (SAD) has been a central focus of community ecology for over fifty years, and is currently the subject of widespread renewed interest. The gambin model has recently been proposed as a model that provides a superior fit to commonly preferred SAD models. It has also been argued that the model's single parameter (α) presents a potentially informative ecological diversity metric, because it summarises the shape of the SAD in a single number. Despite this potential, few empirical tests of the model have been undertaken, perhaps because the necessary methods and software for fitting the model have not existed. Here, we derive a maximum likelihood method to fit the model, and use it to undertake a comprehensive comparative analysis of the fit of the gambin model. The functions and computational code to fit the model are incorporated in a newly developed free-to-download R package (gambin). We test the gambin model using a variety of datasets and compare the fit of the gambin model to fits obtained using the Poisson lognormal, logseries and zero-sum multinomial distributions. We found that gambin almost universally provided a better fit to the data and that the fit was consistent for a variety of sample grain sizes. We demonstrate how α can be used to differentiate intelligibly between community structures of Azorean arthropods sampled in different land use types. We conclude that gambin presents a flexible model capable of fitting a wide variety of observed SAD data, while providing a useful index of SAD form in its single fitted parameter. As such, gambin has wide potential applicability in the study of SADs, and ecology more generally.