Computationally-guided thermostabilization of the primary endoglucanase from Hypocrea jecorina for cellulosic biofuel production
Data(s) |
2014
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Resumo |
<p>The creation of thermostable enzymes has wide-ranging applications in industrial, scientific, and pharmaceutical settings. As various stabilization techniques exist, it is often unclear how to best proceed. To this end, we have redesigned Cel5A (<i>Hj</i>Cel5A) from <i>Hypocrea jecorina</i> (anamorph <i>Trichoderma reesei</i>) to comparatively evaluate several significantly divergent stabilization methods: 1) consensus design, 2) core repacking, 3) helix dipole stabilization, 4) FoldX ΔΔG approximations, 5) Triad ΔΔG approximations, and 6) entropy reduction through backbone stabilization. As several of these techniques require structural data, we initially solved the first crystal structure of <i>Hj</i>Cel5A to 2.05 Å. Results from the stabilization experiments demonstrate that consensus design works best at accurately predicting highly stabilizing and active mutations. FoldX and helix dipole stabilization, however, also performed well. Both methods rely on structural data and can reveal non-conserved, structure-dependent mutations with high fidelity. <i>Hj</i>Cel5A is a prime target for stabilization. Capable of cleaving cellulose strands from agricultural waste into fermentable sugars, this protein functions as the primary endoglucanase in an organism commonly used in the sustainable biofuels industry. Creating a long-lived, highly active thermostable <i>Hj</i>Cel5A would allow cellulose hydrolysis to proceed more efficiently, lowering production expenses. We employed information gleaned during the survey of stabilization techniques to generate <i>Hj</i>Cel5A variants demonstrating a 12-15 °C increase in the temperature at which 50% of the total activity persists, an 11-14 °C increase in optimal operating temperature, and a 60% increase over the maximal amount of hydrolysis achievable using the wild type enzyme. We anticipate that our comparative analysis of stabilization methods will prove useful in future thermostabilization experiments.</p> |
Formato |
application/pdf application/zip |
Identificador |
http://thesis.library.caltech.edu/8027/14/LeeToniM-2014-Thesis.pdf http://thesis.library.caltech.edu/8027/7/Supplemental%20Material.zip Lee, Toni Marie (2014) Computationally-guided thermostabilization of the primary endoglucanase from Hypocrea jecorina for cellulosic biofuel production. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/Z9S180G0. http://resolver.caltech.edu/CaltechTHESIS:11172013-001549340 <http://resolver.caltech.edu/CaltechTHESIS:11172013-001549340> |
Relação |
http://resolver.caltech.edu/CaltechTHESIS:11172013-001549340 http://thesis.library.caltech.edu/8027/ |
Tipo |
Thesis NonPeerReviewed |