String Measure Applied to String Self-Organizing Maps and Networks of Evolutionary Processors

* Supported by projects CCG08-UAM TIC-4425-2009 and TEC2007-68065-C03-02

This paper shows some ideas about how to incorporate a string learning stage in self-organizing algorithms. T. Kohonen and P. Somervuo have shown that self-organizing maps (SOM) are not restricted to numerical data. This paper proposes a symbolic measure that is used to implement a string self-organizing map based on SOM algorithm. Such measure between two strings is a new string. Computation over strings is performed using a priority relationship among symbols; in this case, symbolic measure is able to generate new symbols. A complementary operation is defined in order to apply such measure to DNA strands. Finally, an algorithm is proposed in order to be able to implement a string self-organizing map.