Registry of samples and environmental context from the Ocean Sampling Day 2014

Autoria(s): Ocean Sampling Day Consortium, Participants
Cobertura

MEDIAN LATITUDE: 36.275617 * MEDIAN LONGITUDE: -8.815968 * SOUTH-BOUND LATITUDE: -67.344000 * WEST-BOUND LONGITUDE: -157.843510 * NORTH-BOUND LATITUDE: 78.453333 * EAST-BOUND LONGITUDE: 174.818567 * DATE/TIME START: 2014-06-12T11:20:00 * DATE/TIME END: 2014-07-13T07:40:00 * MINIMUM DEPTH, water: 0 m * MAXIMUM DEPTH, water: 80 m
Data(s)

28/10/2015
Resumo

The Ocean Sampling Day (OSD) is a simultaneous sampling campaign of the world's oceans which took place (for the first time) on the summer solstice (June 21st) in the year 2014. These cumulative samples, related in time, space and environmental parameters, provide insights into fundamental rules describing microbial diversity and function and contribute to the blue economy through the identification of novel, ocean-derived biotechnologies. We see OSD data as a reference data set for generations of experiments to follow in the coming decade. The present data set includes a description of each sample collected during the Ocean Sampling Day 2014 and provides contextual environmental data measured concurrently with the collection of water samples for genomic analyses.
Formato

text/tab-separated-values, 7078 data points
Identificador

https://doi.pangaea.de/10.1594/PANGAEA.854419

doi:10.1594/PANGAEA.854419
Idioma(s)

en
Publicador

PANGAEA
Relação

Kopf-Klindworth, Anna; Bicak, Mesude; Kottmann, Renzo; Schnetzer, Julia; Kostadinov, Ivaylo; Lehmann, Katja; Fernandez-Guerra, Antonio; Jeanthon, Christian; Rahav, Eyal; Ullrich, Matthias; Wichels, Antje; Gerdts, Gunnar; Paraskevi, Polymenakou; Kotoulas, Giorgos; Siam, Rania; Abdallah, Rehab Zohier; Sonnenschein, Eva C; Cariou, Thierry; O'Gara, Fergal; Jackson, Stephen; Orlic, Sandi; Steinke, Michael; Busch, Julia; Duarte, Bernardo; Cacador, Isabel; Canning-Clode, Joao; Bobrova, Oleksandra; Marteinsson, Viggo; Reynisson, Eyjolfur; Loureiro, Isabel; Luna, Gian Marco; Quero, Grazia Marina; Löscher, Carolin R.; Kremp, Anke; DeLorenzo, Marie E; Ovreås, Lise; Tolman, Jennifer; LaRoche, Julie; Penna, Antonella; Frischer, Marc; Davis, Timothy; Barker, Katherine; Meyer, Christopher P; Ramos, Sandra; Magalhães, Catarina; Jude-Lemeilleur, Florence; Aguirre-Macedo, Ma Leopoldina; Wang, Shiao; Poulton, Nicole; Jones, Michael Scott; Collin, Rachel; Fuhrman, J A; Conan, Pascal; Alonso, Cecilia; Stambler, Noga; Goodwin, Kelly; Yakimov, Michael M; Baltar, Federico; Bodrossy, Levente; Van De Kamp, Jodie; Frampton, Dion; Ostrowski, Martin; van Ruth, Paul; Malthouse, Paul; Claus, Simon; Deneudt, Klaas; Mortelmans, Jonas; Pitois, Sophie; Wallom, David; Salter, Ian; Costa, Rodrigo; Schroeder, Declan C; Kandil, Mahrous M; Amaral, Valentina; Biancalana, Florencia; Santana, Rafael; Pedrotti, Maria-Luiza; Yoshida, Takashi; Ogata, Hiroyuki; Ingleton, Tim; Munnik, Kate; Rodriguez-Ezpeleta, Naiara; Berteaux-Lecellier, Veronique; Wecker, Patricia; Cancio, Ibon; Vaulot, Daniel; Bienhold, Christina; Ghazal, Hassan; Chaouni, Bouchra; Essayeh, Soumya; Ettamimi, Sara; Zaid, El Houcine; Boukhatem, Noureddine; Bouali, Abderrahim; Chahboune, Rajaa; Barrijal, Said; Timinouni, Mohammed; El Otmani, Fatim; Bennani, Mohamed; Mea, Marianna; Todorova, Nadezhda; Karamfilov, Ventzislav; ten Hoopen, Petra; Cochrane, Guy; L'Haridon, Stephane; Bizsel, Kemal Can; Vezzi, Alessandro; Lauro, Federico M; Martin, Patrick; Jensen, Rachelle M; Hinks, Jamie; Gebbels, Susan; Rosselli, Riccardo; De Pascale, Fabio; Schiavon, Riccardo; dos Santos, Antonina; Villar, Emilie; Pesant, Stephane; Cataletto, Bruno; Malfatti, Francesca; Edirisinghe, Ranjith; Herrera Silveira, Jorge A; Barbier, Michele; Turk, Valentina; Tinta, Tinkara; Fuller, Wayne J; Salihoglu, Ilkay; Serakinci, Nedime; Ergoren, Mahmut Cerkez; Bresnan, Eileen; Iriberri, Juan; Fronth Nyhus, Paul Anders; Bente, Edvardsen; Karlsen, Hans Erik; Golyshin, Peter N; Gasol, Josep M; Moncheva, Snejana; Dzhembekova, Nina; Johnson, Zackary; Sinigalliano, Christopher David; Gidley, Maribeth Louise; Zingone, Adriana; Danovaro, Roberto; Tsiamis, George; Clark, Melody S; Costa, Ana Cristina; El Bour, Monia; Martins, Ana; Collins, R Eric; Ducluzeau, Anne-Lise; Martinez, Jonathan; Costello, Mark J; Amaral-Zettler, Linda A; Gilbert, Jack Anthony; Davies, Neil; Field, Dawn; Glöckner, Frank Oliver (2015): The ocean sampling day consortium. GigaScience, 4(1), doi:10.1186/s13742-015-0066-5

Kottmann, Renzo: OSD 2014 environmental data csv documentation. https://github.com/MicroB3-IS/osd-analysis/wiki/OSD-2014-environmental-data-csv-documentation

ten Hoopen, Petra; Cochrane, Guy; MicroB3 Consortium (2014): Ocean Sampling Day Handbook - Version of June 2014. Version 2.0, http://store.pangaea.de/Projects/OSD_2014/OSD_Handbook_v2_June_2014.pdf

ten Hoopen, Petra; Pesant, Stephane; Kottmann, Renzo; Kopf-Klindworth, Anna; Bicak, Mesude; Claus, Simon; Deneudt, Klaas; Borremans, Catherine; Thijsse, Peter; Dekeyzer, Stefanie; Schaap, Dick; Bowler, Chris; Glöckner, Frank Oliver; Cochrane, Guy (2015): Marine microbial biodiversity, bioinformatics and biotechnology (M2B3) data reporting and service standards. Standards in Genomic Sciences, 10(1), doi:10.1186/s40793-015-0001-5
Direitos

CC-BY: Creative Commons Attribution 3.0 Unported

Access constraints: unrestricted
Palavras-Chave #[BUCKET-10]; [BUCKET-20]; [BUCKET-40]; [BUCKET-5]; [HVP-PUMP]; Ammonium; Bacteria, production as carbon; Biogeographical province; Biome; BOT; BOT_10L; BOT_20L; BOT_2L; BOT_4L; BOT_5L; Bottle, Kemmerer; Bottle, Nalgene 10-L; Bottle, Nalgene 4-L; Bottle, Nalgene 5-L; Bottle, Nansen; Bottle, Niskin; Bottle, Niskin 1.6-L; Bottle, Niskin 10-L; Bottle, Niskin 12-L; Bottle, Niskin 20-L; Bottle, Niskin 2-L; Bottle, Niskin 30-L; Bottle, Niskin 3-L; Bottle, Niskin 5-L; Bottle, Niskin 8-L; Bottle, Ruttner; Bottle, unknown; Bottle, unknown 10-L; Bottle, unknown 20-L; Bottle, unknown 2-L; Bottle, unknown 4-L; Bottle, unknown 5-L; Bottle, Van Dorn; Bottle, Van Dorn 2.2-L; Bucket, plastic; Bucket, plastic 10-L; Bucket, plastic 20-L; Bucket, plastic 40-L; Bucket, plastic 5-L; Campaign of event; Carbon, organic, dissolved; Carbon, organic, particulate; Chlorophyll a; Comment of event; Conductivity; Country; CTD/Rosette; CTD-RO; Date/Time of event; Date/Time of event 2; DEPTH, water; Device of event; Environmental feature; Event label; Fluorometer; Geographic name/locality; High Volume Peristaltic Pump; HORIZON; Horizontal water sampler; IHO General Sea Areas (1953) registered at www.marineregions.org; KEM; Large Marine ecosystem; Latitude of event; Latitude of event 2; LIMNOS water sampler; LIMNOSWS; Local Time; Longhurst (2007) registered at marineregions.org; Longitude of event; Longitude of event 2; Material; MicroB3; MicroB3 - Microbial Biodiversity, Bioinformatics and Biotechnology; NAS; NB_10L; NB_4L; NB_5L; NIS; NIS_1.6L; NIS_10L; NIS_12L; NIS_20L; NIS_2L; NIS_30L; NIS_3L; NIS_5L; NIS_8L; Nitrate; Nitrite; Nitrogen, organic, dissolved; Nitrogen, organic, particulate; OSD1_20140621T1110Z; OSD10_20140621T2050Z; OSD100_20140622T0800Z; OSD101_20140621T1105Z; OSD102_20140621T1200Z; OSD103_20140621T1015Z; OSD105_20140621T1839Z; OSD106_20140620T1100Z; OSD106_20140620T1130Z; OSD107_20140620T0950Z; OSD108_20140620T1140Z; OSD109_20140620T1100Z; OSD11_20140617T1503Z; OSD110_20140621T1030Z; OSD111_20140621T0830Z; OSD113_20140621T1125Z; OSD114_20140621T1005Z; OSD115_20140621T1430Z; OSD116_20140621T1330Z; OSD117_20140621T1610Z; OSD118_20140621T1214Z; OSD119_20140621T1800Z; OSD120_20140621T1813Z; OSD121_20140621T1759Z; OSD122_20140622T0745Z; OSD123_20140622T0900Z; OSD124_20140621T0325Z; OSD125_20140621T1300Z; OSD126_20140621T1215Z; OSD127_20140621T1143Z; OSD128_20140621T1705Z; OSD129_20140621T1638Z; OSD13_20140621T0630Z; OSD130_20140621T1141Z; OSD131_20140621T0824Z; OSD132_20140622T0845Z; OSD133_20140621T0724Z; OSD135_20140621T0303Z; OSD136_20140621T1056Z; OSD137_20140621T1401Z; OSD14_20140623T0805Z; OSD141_20140620T0845Z; OSD142_20140621T1500Z; OSD143_20140621T1845Z; OSD143_20140621T1900Z; OSD144_20140624T0608Z; OSD145_20140621T1045Z; OSD146_20140621T0542Z; OSD147_20140621T0533Z; OSD148_20140621T0845Z; OSD149_20140621T1440Z; OSD15_20140621T0730Z; OSD150_20140621T1500Z; OSD151_20140621T1430Z; OSD152_20140620T1554Z; OSD152_20140620T1610Z; OSD152_20140620T1630Z; OSD152_20140620T1650Z; OSD153_20140621T1015Z; OSD154_20140620T1120Z; OSD155_20140621T0700Z; OSD156_20140621T1000Z; OSD157_20140620T0900Z; OSD158_20140621T1120Z; OSD159_20140621T1000Z; OSD162_20140623T1100Z; OSD163_20140620T1200Z; OSD164_20140613T1000Z; OSD165_20140623T0900Z; OSD166_20140621T0948Z; OSD167_20140621T1415Z; OSD168_20140621T0915Z; OSD169_20140621T1149Z; OSD17_20140620T0700Z; OSD170_20140625T0504Z; OSD171_20140625T0423Z; OSD172_20140625T0245Z; OSD173_20140625T0139Z; OSD174_20140625T0047Z; OSD175_20140624T1313Z; OSD176_20140624T1127Z; OSD177_20140624T1035Z; OSD178_20140624T2320Z; OSD18_20140620T0800Z; OSD182_20140624T1316Z; OSD183_20140624T2158Z; OSD184_20140624T1806Z; OSD185_20140624T1434Z; OSD186_20140621T1704Z; OSD188_20140624T2148Z; OSD189_20140624T1605Z; OSD19_20140623T0730Z; OSD190_20140713T0722Z; OSD191_20140702T1433Z; OSD2_20140620T1126Z; OSD20_20140620T1030Z; OSD21_20140621T1055Z; OSD22_20140623T0800Z; OSD24_20140621T1230Z; OSD25_20140621T0900Z; OSD26_20140621T1245Z; OSD28_20140621T0415Z; OSD29_20140621T1500Z; OSD3_20140620T0540Z; OSD30_20140620T0815Z; OSD31_20140612T1120Z; OSD32_20140623T1520Z; OSD33_20140619T1535Z; OSD34_20140621T0930Z; OSD35_20140621T1701Z; OSD36_20140621T1730Z; OSD37_20140619T1311Z; OSD38_20140620T1655Z; OSD39_20140619T0500Z; OSD4_20140620T0900Z; OSD41_20140621T1840Z; OSD42_20140621T1000Z; OSD43_20140621T1849Z; OSD45_20140622T2130Z; OSD46_20140621T2000Z; OSD47_20140621T1256Z; OSD48_20140621T0950Z; OSD49_20140621T0930Z; OSD5_20140619T0515Z; OSD5_20140619T1100Z; OSD50_20140620T0709Z; OSD51_20140621T1556Z; OSD52_20140621T1007Z; OSD53_20140621T0843Z; OSD54_20140621T1545Z; OSD55_20140621T1630Z; OSD56_20140624T0720Z; OSD57_20140624T0738Z; OSD58_20140621T1530Z; OSD6_20140621T0930Z; OSD60_20140619T1545Z; OSD61_20140621T2108Z; OSD62_20140621T1000Z; OSD63_20140620T1130Z; OSD64_20140621T0930Z; OSD65_20140620T2230Z; OSD69_20140621T1508Z; OSD7_20140621T2000Z; OSD70_20140621T1111Z; OSD71_20140621T2335Z; OSD72_20140621T0912Z; OSD73_20140621T1115Z; OSD74_20140621T1115Z; OSD76_20140620T0915Z; OSD77_20140620T1100Z; OSD78_20140621T0900Z; OSD80_20140621T1730Z; OSD80_20140621T1830Z; OSD80_20140621T1930Z; OSD81_20140621T1058Z; OSD87_20140621T1107Z; OSD9_20140618T0418Z; OSD90_20140621T0800Z; OSD91_20140621T1100Z; OSD92_20140621T1100Z; OSD93_20140621T1100Z; OSD94_20140621T0930Z; OSD95_20140621T0825Z; OSD96_20140621T1250Z; OSD97_20140621T1235Z; OSD98_20140621T1240Z; OSD99_20140621T1024Z; OSD-Jun-2014; Oxygen; pH; Phosphate; Plankton abundance; Primary production of carbon; published at the European Nucleotides Archive; PUMP; Radiation, photosynthetically active; registered at the European Nucleotides Archive; RWS; Salinity; Sample code/label; Sample ID; Sample method; Silicate; Site; Temperature, water; terms registered at EnvO, the Environmental Ontology; Time zone; Turbidity (Formazin Turbidity Unit); Uniform resource locator/link to file; Uniform resource locator/link to reference; URI of event; VDB; VDB_2.2L; Water pump; WB
Tipo

Dataset
Acesso ao item digital