Energy localization in the Peyrard-Bishop DNA model


Autoria(s): De Luca, J.; Drigo Filho, Elso; Ponno, A.; Ruggiero, José Roberto
Contribuinte(s)

Universidade Estadual Paulista (UNESP)

Data(s)

20/05/2014

20/05/2014

01/08/2004

Resumo

We study energy localization on the oscillator chain proposed by Peyrard and Bishop to model DNA. We search numerically for conditions with initial energy in a small subgroup of consecutive oscillators of a finite chain and such that the oscillation amplitude is small outside this subgroup on a long time scale. We use a localization criterion based on the information entropy and verify numerically that such localized excitations exist when the nonlinear dynamics of the subgroup oscillates with a frequency inside the reactive band of the linear chain. We predict a mimium value for the Morse parameter (mu>2.25) (the only parameter of our normalized model), in agreement with the numerical calculations (an estimate for the biological value is mu=6.3). For supercritical masses, we use canonical perturbation theory to expand the frequencies of the subgroup and we calculate an energy threshold in agreement with the numerical calculations.

Formato

9

Identificador

http://dx.doi.org/10.1103/PhysRevE.70.026213

Physical Review E. College Pk: Amer Physical Soc, v. 70, n. 2, 9 p., 2004.

1539-3755

http://hdl.handle.net/11449/35010

10.1103/PhysRevE.70.026213

WOS:000223784600042

WOS000223784600042.pdf

Idioma(s)

eng

Publicador

Amer Physical Soc

Relação

Physical Review E

Direitos

closedAccess

Tipo

info:eu-repo/semantics/article