Conformational behavior of different possible ways of oligoglycine formation in a solvent-free environment


Autoria(s): CHAUDHURI, Puspitapallab; Canuto, Sylvio Roberto Accioly
Contribuinte(s)

UNIVERSIDADE DE SÃO PAULO

Data(s)

20/10/2012

20/10/2012

2008

Resumo

The possible ways for glycine oligopeptide formation in gas phase, both in the extended P-strand like conformation and folded 2(7)-ribbon like conformations are analyzed using quantum chemical calculations. We focus on the sequential formation of peptide bond through upgradation of the immediate lower order molecule and observe the consequences in other related processes like oligoglycine formation through simultaneous peptide linkage of n glycine monomers and interchange of molecular conformation through peptide linkage. A comparison is made between the structures and binding energies obtained for both conformers. All binding energies are increased by the zero-point energy contribution. The role of electron correlation effects is briefly analyzed. The folded 2(7)-ribbon-like conformations in vacuo are found to be more stable in comparison to the extended structure. (c) 2007 Elsevier B.V. All rights reserved.

Identificador

JOURNAL OF MOLECULAR STRUCTURE-THEOCHEM, v.849, n.1/Mar, p.25-32, 2008

0166-1280

http://producao.usp.br/handle/BDPI/29250

10.1016/j.theochem.2007.10.013

http://dx.doi.org/10.1016/j.theochem.2007.10.013

Idioma(s)

eng

Publicador

ELSEVIER SCIENCE BV

Relação

Journal of Molecular Structure-theochem

Direitos

closedAccess

Copyright ELSEVIER SCIENCE BV

Palavras-Chave #binding energy #amino acid #peptide bond #density functional theory #conformational stability #PERIODIC BOUNDARY-CONDITIONS #HELIX-FORMING TENDENCIES #AB-INITIO #GAS-PHASE #AMINO-ACIDS #CORRELATION-ENERGY #PEPTIDE-BOND #GLYCINE #POLYGLYCINE #DENSITY #Chemistry, Physical
Tipo

article

original article

publishedVersion