Downhill kinetics of biomolecular interface binding: Globally connected scenario


Autoria(s): Wang J; Huang WM; Lu HY; Wang EK
Data(s)

2004

Resumo

We study the kinetics of the biomolecular binding process at the interface using energy landscape theory. The global kinetic connectivity case is considered for a downhill funneled energy landscape. By solving the kinetic master equation, the kinetic time for binding is obtained and shown to have a U-shape curve-dependence on the temperature. The kinetic minimum of the binding time monotonically decreases when the ratio of the underlying energy gap between native state and average non-native states versus the roughness or the fluctuations of the landscape increases. At intermediate temperatures,fluctuations measured by the higher moments of the binding time lead to non-Poissonian, non-exponential kinetics. At both high and very low temperatures, the kinetics is nearly Poissonian and exponential.

Identificador

http://ir.ciac.jl.cn/handle/322003/14797

http://www.irgrid.ac.cn/handle/1471x/150547

Idioma(s)

英语

Fonte

Wang J;Huang WM;Lu HY;Wang EK.Downhill kinetics of biomolecular interface binding: Globally connected scenario,BIOPHYSICAL JOURNAL,2004,87(4 ):2187-2194

Palavras-Chave #PROTEIN-FOLDING KINETICS #MOLECULE DYNAMICS PHOTON #ROUGH ENERGY LANDSCAPES #SINGLE-MOLECULE #HEME-PROTEINS #COMBINATORIAL TECHNOLOGIES #STRUCTURAL DYNAMICS #ENZYMATIC DYNAMICS #DRUG DISCOVERY #LIGAND-BINDING
Tipo

期刊论文