Ab Initio MD Simulations of the Bronsted Acidity of Glutathione in Aqueous Solutions: Predicting pK(a) Shifts of the Cysteine Residue


Autoria(s): Tummanapelli, Anil Kumar; Vasudevan, Sukumaran
Data(s)

2016

Resumo

The tripeptide glutathione (GSH) is one of the most abundant peptides and the major repository for nonprotein sulfur in both animal and plant cells. It plays a critical role in intracellular oxidative stress management by the reversible formation of glutathione disulfide with the thiol-disulfide pair acting as a redox buffer. The state of charge of the ionizable groups of GSH can influence the redox couple, and hence the pK(a) value of the cysteine residue of GSH is critical to its functioning. Here we report ab initio Car-Parrinello molecular dynamics simulations of glutathione solvated by 200 water molecules, all of which are considered in the simulation. We show that the free-energy landscape for the protonation-deprotonation reaction of the cysteine residue of GSH computed using metadynamics sampling provides shift in the dissociation constant values as compared with the isolated accurate estimates of the pK(a) and correctly predicts the cysteine amino acid.

Formato

application/pdf

Identificador

http://eprints.iisc.ernet.in/53037/1/Jou_Phy_Che-B_119-49_15353_2016.pdf

Tummanapelli, Anil Kumar and Vasudevan, Sukumaran (2016) Ab Initio MD Simulations of the Bronsted Acidity of Glutathione in Aqueous Solutions: Predicting pK(a) Shifts of the Cysteine Residue. In: JOURNAL OF PHYSICAL CHEMISTRY B, 119 (49). pp. 15353-15358.

Publicador

AMER CHEMICAL SOC

Relação

http://dx.doi.org/10.1021/acs.jpcb.5b10093

http://eprints.iisc.ernet.in/53037/

Palavras-Chave #Inorganic & Physical Chemistry
Tipo

Journal Article

PeerReviewed