树鼠mtDNA限制性内切酶图谱及其与小家鼠褐家鼠的亲缘关系

本实验用ＡｐｅⅠ，ＡｖａⅠ，ＢａｍＨⅠ，ＢｃｌⅠ，ＢｇｌⅠ，ＣｌａⅠ，ＥｃｏＲⅠ，ＥｃｏＲＶ，ＨｐａⅠ，ＰｓｔⅠ，ＰｖｕⅡ，ＳｃａⅠ，ＸｂａⅠ等１３种限制性内切酶分析树鼠（Ｃｈｉｒｏｍｙｓｃｕｓｃｈｉｒｏｐｅｓ）的ｍｔＤＮＡ限制性片段长度多态性，并用双酶解法构建了其中８种酶的限制性内切酶图谱。根据限制性片段差异法和分子钟，计算并讨论树鼠和小家鼠（Ｍｕｓｍｕｓｃｕｌｕｓ）、褐家鼠（Ｒａｔｔｕｓｎｏｒｖｅｇｉｃｕｓ）的ｍｔＤＮＡ遗传距离和亲缘关系。结果表明树鼠与褐家鼠的关系较接近，两者的分歧时间在距今１５００─２０００万年前，即处于中新世早中期。

云南黄牛和大额牛的mtDNA多态性研究

云南黄牛有两种类型的mtDNA分子, 一种是普遍黄牛类型, 另一种是瘤牛类型, 两者的频率 分别为33%和67%。没有发现过渡型和重组型。昆明黑白花奶牛的mtDNA与云南黄牛的相关似 。云南黄牛可能具有两种起源, 即普通黄牛起源和瘤牛起源。今天的云南黄牛群体是这两种类型的混合。大额牛的限制性类型与瘤牛相同, 表明大额牛的起源与瘤牛有密切关系。图2 表1参18

猪獾和黄鼬mtDNA物理图谱及位点变异性初探

用12种限制性内切酶分析了猪獾和黄鼬的mtDNA限制性片段, 并用双酶法构建限制性内切酶图谱。对哺乳动物mtDNA限制性位点在远缘物种间的保守性和变异性进行了探讨。

利用mtDNA 16S rRNA序列差异鉴定江西青岚湖的河蚌物种

对从青岚湖采集的 10属 14种河蚌的 19个样本进行了 16SrRNA的序列测定 ,并同GenBank中鄱阳湖流域相同物种河蚌的序列比较 ,分析了基于Kimura 2 parameter模型参数得到的遗传距离 ,并构建了它们的UPGMA树。结果显示 ,所有用于比较的河蚌种间遗传距离变化范围在 0 .0 2 74— 0 .2 2 90 ,平均为 0 .132 5 ,种内遗传距离在0 .0 0 34— 0 .0 0 6 8之间 ,平均为 0 .0 0 4 5 ,种间遗传距离远大于种内距离。表明以 16SrR

用mtDNA 12S rRNA序列变异检验鲤形目鱼类系统发育关系(英文)

通过对鲤形目鱼类 5个科的代表类群的完整线粒体 12SrRNA进行测序和分析 ,以检验目前的形态学假说。经序列比对后 ,有 10 0 0个位点 ,其中 467个位点在茎区 ,53 3个在环区 ;有 3 95个位点为变化位点 ,其中 2 67个为系统发育信息位点。采用邻接法和最大简约法进行了系统发育分析 ,其结果支持鲤科鱼类成为一个单系群 ,非鲤科的鲤形目鱼类成为另一个单系群的观点 ,这与Siebert提出的假说相一致。鲤科鱼类包含 3个主要的分支 ,即鱼丹系、鲤系和雅罗鱼系 ;但在非鲤科鲤形目鱼类中 ,其

中华鲟(Acipenser sinensis)及相关种类的mtDNA控制区串联重复序列及其进化意义

采用 PCR技术和 DNA测序技术 ,发现了我国一级珍稀保护动物中华鲟 ( Acipensersinensis)线粒体 DNA( mt DNA)的控制区 ( D- loop)存在数目不等的串联重复序列 ,该重复序列造成了中华鲟广泛的异质性现象 .从分子水平进行了不同类型重复序列变化规律的研究 ,同时还初探了重复序列在我国其它几种鲟鱼类的存在情况 ,发现在白鲟 ( Psephurus gladius)、达氏鲟 ( A.dabryanus)和史氏鲟 ( A.schrenckii)均存在类似的重复序列结构 .序

三个三倍体鲫鱼品系及野鲫mtDNA的比较研究

用16种限制性内切酶研究了银鲫(3N=156～162)、彭泽鲫(3N=162)和缩骨鲫(3N=150)3个三倍体鲫鱼品系及野鲫(2N=100)的线粒体DNA。有6种酶在种系间和种系内产生限制性片段长度多态性(RFLPs),银鲫共存在4种单倍型,彭泽鲫2种,野鲫3种,缩骨鲫1种。彭泽鲫和银鲫拥有相同的常见单倍型,缩骨鲫的单倍型属于野鲫的常见型。根据限制性位点的变异数据,计算了单倍型间的相似性、核苷酸多样性、品系内核苷酸多样性和品系间的遗传距离,确定彭泽鲫属于银鲫的一个地方品系,缩骨鲫属于野鲫的一个地方品系。

一种从鱼类卵巢制备地高辛标记mtDNA探针的简易方法

一种从鱼类卵巢制备地高辛标记ｍｔＤＮＡ探针的简易方法＊ＡＳＩＭＰＬＥＭＥＴＨＯＤＦＯＲＧＥＴＴＩＮＧＤＩＧＯＸＩＧＥＮＩＮＬＡＢＥＬＩＮＧＰＲＯＢＬＥＯＦｍｔＤＮＡＦＲＯＭＯＶＡＲＹＯＦＦＩＳＨ关键词鱼类，线粒体ＤＮＡ，地高辛标记ＫｅｙｗｏｒｄｓＦｉ...

Speciation and Phylogeography of Opsariichthys bidens (Pisces: Cypriniformes: Cyprinidae) in China: Analysis of the Cytochrome b Gene of mtDNA from Diverse Populations

Gao-Yan Li, Xu-Zhen Wang, Ya-Hui Zhao, Jie Zhang, Chun-Guang Zhang, and Shun-Ping He (2009) Speciation and phylogeography of Opsariichthys bidens (Pisces: Cypriniformes: Cyprinidae) in China: analysis of the cytochrome b gene of mtDNA from diverse populations. Zoological Studies 48(4): 569-583. The cyprinid fish Opsariichthys bidens Gunther is distributed in all major river systems of continental East Asia, and represents an attractive model for phylogeographic studies among cyprinid species or within a given species. In this study, we investigated the phylogeographic and demographic history of this species, using partial sequences of the cytochrome (cyt) b gene in mitochondrial (mt)DNA. Fish samples were collected from almost all major river systems where O. bidens is distributed in China. Sequence analysis showed remarkably high polymorphism, with 125 haplotypes in the 234 specimens examined, and with 89.8% of haplotypes occurring in only 1 specimen. A neutrality test indicated that some groups were not at mutation-drift equilibrium, suggesting a past population expansion. These results were supported by a mismatch distribution analysis. Based on our analysis, O. bidens consists of 4 groups belonging to 2 clades. The divergence time of the 2 clades was estimated to be 11.06-8.04 my. This value corresponds to the time of the 2nd uplift of the Qinghai-Tibet Plateau, the emergence of the East Asian monsoon, and the Epoch-6 Event. A two species scheme is proposed. http://zoolstud.sinica.edu.tw/Journals/48.4/569.pdf

MtDNA phylogeny provides evidence of generic polyphyleticism for East Asian bagrid catfishes

We explore the intrafamilial relationships of East Asian bagrid catfishes (Hemibagrus, Pseudobagrus, Pelteobagrus, and Leiocassis) based on 245 sequences of 1092 bp mitochondrial cytochrome b fragments. Four haplotypes were found to be shared by Pseudobagrus ussuriensis, Pelteobagrus vachelli and Pelteobagrus nitidus. Phylogenetic trees were performed using the neighbor joining, maximum parsimony, maximum likelihood, and Bayesian likelihood methods. The phylogenetic trees based on NJ, MP, ML and BL inferences strongly support polyphyleticism for the currently recognized genera Pseudobagrus, Pelteobagrus and Leiocassis. However, the species currently assigned to these three genera form a robustly monophyletic group with relatively low genetic divergence. The structure of maxillary barbels and serrations on the anterior edge of the pectoral spines seem to be indicatory of appropriate phylogenetic traits. We propose that only Hemibagrus and Pseudobagrus are the only valid genera of East Asian bagrids.

Ex situ conservation status of an endangered Yangtze finless porpoise population (Neophocaena phocaenoides asiaeorientalis) as measured from microsatellites and mtDNA diversity

The Yangtze finless porpoise, Neophocaena phocaenoides asiaeorientalis, is all endangered small cetacean that occurs only in the middle and lower reaches of the Yangtze River of China. The establishment of a breeding population of the porpoise in Tian-e-Zhou Baiji National Natural Reserve represents the first attempt at ex situ conservation efforts for a cetacean species. With the goal of effective protection, management, and monitoring of this preserved population, we examined its genetic diversity using 930 bp of mtDNA control region sequences and 13 polymorphic microsatellite loci. A very low level of genetic variation (h = 0.6010 +/- 0.0029 s.d.; pi = 0.0007 +/- 0.0000002 s.d.) in the mtDNA control region sequences and a moderate genetic diversity (Ho = 0.5740 +/- 0.2575 s.d.) in the microsatellites were detected in the population. It is necessary to introduce more individuals with representative genetic variations into the reserve ill order to foml a larger and healthier group structure for long-term survival of the population. Successful establishment of the Yangtze finless porpoise population in the Reserve also provides a useful model for an ex situ conservation programme for other rare and endangered species. (c) 2005 International Council for the Exploration ofthe Sea. Published by Elsevier Ltd. All rights reserved.

Molecular phylogeny of three subspecies of common carp Cyprinus carpio, based on sequence analysis of cytochrome b and control region of mtDNA

The complete cytochrome b and the control region of mtDNA (about 2070 bp in total) of 10 strains belonging to three subspecies of the common carp, including three wild subspecies (the Yangtze River wild common carp - Cyprinus carpio haematopterus, Yuanjiang River wild common carp Cyprinus carpio rubrofuscus and Volga River wild common carp - Cyprinus carpio carpio) and seven domestic strains (Xingguo red carp, Russian scattered scaled mirror carp, Qingtian carp, Japanese Koi carp, purse red carp, Big-belly carp, German mirror carp) were sequenced. Phylogenetic analysis indicated that the 10 strains form three distinct clades, corresponding to C. c. haematopterus, C. c. rubrofuscus and C. c. carpio respectively. Purse red carp, an endemic domestic strain in Jiangxi province of China, showed a higher evolution rate in comparison with the other strains of C. c. haematopterus, most probably because of intensive selection and a long history of domestication. Base variation ratios among the three subspecies varied from 0.78% (between C. c. haematopterus and C. c. rubrofuscus) to 1.47%(between C. c. carpio and C. c. rubrofuscus). The topography of the phylogenetic tree and the geographic distribution of three subspecies closely resemble each other. The divergence time between C. c. carpio and the other two subspecies was estimated to be about 0.9 Myr and about 0.5 Myr between C. c. haematopterus and C. c. rubrofuscus. Based on phylogenetic analysis, C. c. rubrofuscus might have diverged from C. c. haematopterus.

Molecular phylogenetic systematics of twelve species of acipenseriformes based on mtDNA ND4L-ND4 gene sequence analysis

Acipenseriformes is an endangered primitive fish group, which occupies a special place in the history of ideas concerning fish evolution, even in vertebrate evolution. However, the classification and evolution of the fishes have been debated. The mitochondrial DNA (mtDNA) ND4L and partial ND4 genes were first sequenced in twelve species of the order Acipenseriformes, including endemic Chinese species. The following points were drawn from DNA sequences analysis: (i) the two species of Huso can be ascribed to Acipenser; (ii) A. dabryanus is the mostly closely related to A. sinensis, and most likely the landlocked form of A. sinensis; (iii) genus Acipenser in trans-Pacific region might have a common origin; (iv) mtDNA ND4L and ND4 genes are the ideal genetic markers for phylogenetic analysis of the order Acipenseriformes.