The polymorphism of lysozyme gene in Zhikong scallop (Chlamys farreri) and its association with susceptibility/resistance to Listonella anguillarum

Lysozyme functions as a crucial biodefence effector against the infection of bacterial pathogens in innate immunity. The nucleotide sequence polymorphisms in promoter region of a nuclear goose type lysozyme gene from Zhikong scallop Chlamys farreri (designated as CFLysG) were investigated to explore their association with susceptibility/resistance to Listonella anguillarum infection. Eight sites of single nucleotide polymorphisms (SNPs) and two sites of insert-deletion (ins-del) polymorphisms were identified in the promoter region of CFLysG. Two of them, -753 TATCTCGATCAGG ins-del polymorphism and -391 A-G SNP were selected to analyze their distribution in the susceptible and resistant stocks, which were identified according to the survival time after L. anguillarum challenge. Using polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP), two genotypes were found at each site, which were ins/del and ins/ins at locus -753, and A/A and A/G at locus -391, respectively. The -753 ins/del genotype was more prevalent in the resistant stock than that in the susceptible stock, 30% vs 16.67% in frequency, but there was no significant difference in the frequency distribution between these two stocks (P=0.15). In contrast, the frequency of -391A/G genotype in the resistant stock was significantly higher (30%) than that in the susceptible stock (7.14%) (P=0.007), indicating a significant association with the resistance of Zhikong scallop to L anguillarum. To confirm the presumption, another independent challenge experiment was performed, in which the cumulative mortality of scallops with -391 A/A genotype (96.8%) was significantly higher than those with -391 A/G genotype (64.5%) (P=0.001), which further validate the association between -391 A/G genotype and the resistance of Zhikong scallop to L anguillarum. These results suggested that the -391 A/G could be a potential marker applied in future selection of Zhikong scallop with enhanced resistance to L anguillarum. (C) 2008 Elsevier Ltd. All rights reserved.

A NOVEL SHELL COLOR VARIANT OF THE PACIFIC ABALONE HALIOTIS DISCUS HANNAI INO SUBJECT TO GENETIC CONTROL AND DIETARY INFLUENCE

Molluscan shells may display a variety of colors, which formation, inheritance, and evolutionary significance are not Well understood. Here we report a new variant of the Pacific abalone Haliotis discus hannai that displays a novel orange shell coloration (O-type) that is clearly distinguishable from the Wild green-shelled abalone (G-type). Controlled mating experiments between O- and G-type abalones demonstrated apparent Mendelian segregations (1:1 or 3:1) in shell colors in F-2 families, which support the notion that the O- and G-types are under strict genetic control at a single locus With a recessive o (for orange shell) allele and a dominant G (for green shell) allele. Feeding with different diets caused modifications of shell color within each genotype, ranging from orange to yellow for O-type and green to dark-brown for the G-type, without affecting the distinction between genotypes. A previously described bluish-purple (B-type) shell color was found in one of the putative oo X oG crosses, suggesting that the B-type may be it recessive allele belonging to the same locus. The new O-type variant had no effect on the growth of Pacific abalone on the early seed-stage. This Study demonstrates that shell color in Pacific abalone is subject to genetic control as well as dietary modification, and the latter probably offers selective advantages in camouflage and predator avoidance.

Diversity and spatial distribution of sediment ammonia-oxidizing crenarchaeota in response to estuarine and environmental gradients in the Changjiang Estuary and East China Sea

Ammonia-oxidizing archaea (AOA) have recently been found to be potentially important in nitrogen cycling in a variety of environments, such as terrestrial soils, wastewater treatment reactors, marine waters and sediments, and especially in estuaries, where high input of anthropogenic nitrogen is often experienced. The sedimentary AOA diversity, community structure and spatial distribution in the Changjiang Estuary and the adjacent East China Sea were studied. Multivariate statistical analysis indicated that the archaeal amoA genotype communities could be clustered according to sampling transects, and the station located in an estuarine mixing zone harboured a distinct AOA community. The distribution of AOA communities correlated significantly with the gradients of surface-water salinity and sediment sorting coefficient. The spatial distribution of putative soil-related AOA in certain sampling stations indicated a strong impact of the Changjiang freshwater discharge on the marine benthic microbial ecosystem. Besides freshwater, nutrients, organic matter and suspended particles, the Changjiang Diluted Water might also contribute to the transport of terrestrial archaea into the seawater and sediments along its flow path.

红毛菜发育过程及其生理基础

红毛菜（Bangia Lyngb.）属于红藻门，与紫菜属同属红毛菜科，其味道和营养都优于紫菜。目前红毛菜栽培产业已在我国福建莆田展开，但栽培技术还有待提高。海藻栽培技术的发展和成熟依赖于对其生长发育过程的认识。本研究针对红毛菜发育过程及相关光合生理展开，并初步探讨了一采自山西娘子关泉淡水红毛菜群体（FWB）的系统地位。 色素突变标记的壳孢子萌发特征表明最初两次分裂产生的4细胞决定了完整植株的形态建成。成熟植株，为雌雄异体。雌性生殖器果胞的标志性分化结构为原始受精丝，环境因子是促发原始受精丝发展的外部因素，其膨大程度随受精的延迟而增大。原孢子是主要的无性生殖孢子类型，在不良环境中，藻体也会形成内生孢子或休眠包囊，或者藻体断裂后重新形成完整的植株。 红毛菜的生长发育很大程度上受环境因子的控制。高温不利于配子体的发育，15-20 ºC比较适宜。红毛菜无性繁殖的最适温度-光照组合为20 ºC-8 h，有性繁殖为15 ºC-12h。 不同发育阶段，PSII实际光合效率（Y(II)）与细胞的健康状况以及光合器官完整性及其在细胞内的分布有关，而与细胞的类型关系不大。健康的假根细胞、已分化未成熟的精子以及果孢子细胞均具有很高的Y(II)。色素体由中间位变为围周位，中央大液泡（营养藻丝）和大小纤维囊泡（成熟孢子与精子）的产生，使得细胞Y(II)降低。刚放散的壳孢子Y(II)很低，说明在壳孢子由贝壳基质释放到自由水体过程，光合作用受到一定程度抑制；而2h后，Y(II)开始恢复，rbcL的转录水平非常高，为孢子的萌发储备物质和能量需求。 在失水和低盐胁迫下，藻体均维持较高的Y(II)。干出处理至藻体重量不再变化，复水后Y(II)可回复初始水平。海生红毛菜在100％淡水培养基中（约20ºC）培养7天后，部分雄性藻体依然活着。从而体现了红毛菜位居高潮带的生理优势。 FWB终生行无性繁殖，藻体形态与发生以及染色体数目（4条）与海生群体没有区别。而rbcL-rbcS Spacer序列显示，红毛菜海生群体（无性和有性）具有完全相同的序列，而FWB与它们有5bp差异，但是与欧洲、北美地区的淡水群体仅1bp不同，初步说明所有淡水红毛菜群体具有共同的原始起源。

Mining expressed sequences for single nucleotide polymorphisms in Pacific abalone Haliotis discus hannai

Although single nucleotide polymorphisms (SNPs) are important resources for population genetics, pedigree analysis and genomic mapping, such loci have not been reported in Pacific abalone so far. In this study, a bioinformatics strategy was adopted to discover SNPs within the expressed sequences (ESTs) of Pacific abalone, Haliotis discus hannai, and furthermore, polymerase chain reaction direct sequencing (PCR-DS) and allele-specific PCR (AS-PCR) were used for SNPs detection and genotype scoring respectively. A total of 5893 ESTs were assembled and 302 putative SNPs were identified. The average density of SNPs in ESTs was 1%. Fifty-two sets of sequencing primers were designed from SNPs flanking ESTs to amplify the genomic DNA, and 13 could generate products of expected size. Polymerase chain reaction direct sequencing of the amplification products from pooled DNA samples revealed 40 polymorphic SNP loci. Using a modified tetra-primer AS-PCR, seven mitochondrial and six nuclear SNPs were typed and characterized among 37 wild abalones. In conclusion, it is feasible to discover SNPs from number limited ESTs and the AS-PCR as a simple, robust and reliable assay could be a primary method for small- and medium-scale SNPs detection in abalones as well as other non-model organisms.

资源受限单机动态调度的并行GA算法研究

研究资源受限系统动态调度问题,针对时序约束问题提出一种并行遗传算法(PGA)。给出满足排序优先次序约束的一种基因编码方法;采用不破坏优先级可行性的交叉操作,并予以证明;建立一种并行处理机制,使搜索避免出现局优现象。在技术允许情况下,单机动态调度引入抢占式加工方式,会一定程度上提高系统的性能。通过仿真试验验证,并行GA算法可兼顾优化效果和计算效率,解决单机动态调度问题。

A型行为核心特征与血管紧张素转换酶基因型相关性研究

In order to study the role of inherited factors and Type A Behavior Pattern (TABP) in the development of CHD, the present study chose the angiotensin I-converting enzyme (ACE) gene as the target gene, and investigated the associations of TABP, the polymorphism of ACE gene with susceptibility to development of CHD in the healthy population and CHD patients from Northern China. 1. Correlation Analysis Between TABP and serum level of ACE in Chinese healthy individuals TABP and serum of ACE were determined in 137 Chinese healthy individuals. The results showed that there was a significant correlation between the scores of CH in TABP invertory and the serum level of ACE. 2 The distribution charicteristics of ACE gene polymorphism frequencies and association with serum level of ACE in Chinese healthy individuals population The polymorphism of ACE gene and serum of ACE were determined in 137 Chinese healthy individuals. The results showed that: the ethnic differences in I/D polymorphism of ACE gene are obvious; deletion polymorphism of the ACE gene is associated with serum ACE level. 3. The relationship between insertion/deletion polymorphism of ACE gene and CHD in a Chinese population I/D polymorphism in intron 16 of the ACE gene was determined by polymerase chain reaction(PCR) in a study of 109 patients with CHD. The results showed: The frequencies of DD genotype(0.39) and D allele(0.63) were higher among the CHD group than among the control subjects(0.12 and 0.42 respectively, P < 0.01). Furthermore, MI and multivessel disease was more strongly associated with (P < 0.01). It is indicated that D allele and DD gentype of ACE might be an important risk factor for CHD, especially for MI or multivessel disease in Chinese population. 4. Correlation Analysis Between Type A Behavior Pattern and the Polymorphism of ACE Gene The polymorphism of ACE gene and type A behavior pattern (TABP) survey were determined in 291 Chinese healthy individuals. The result showed that the higher frequency of rare D allele of an insertion/deletion (I/D) polymorphism of the angiotensin I-converting enzyme (ACE) gene was found in type A behavior individuals compared with type B behavior individuals in 291 healthy individuals; there was a significant correlation between the scores of CH in TABP invertory and DD genotype of the ACE gene. It is suggested that the behavioral attributes of competitiveness, achievement striving, hostility, being irritated easily and impatience may be associated with heredity. 5. Correlation Analysis Between Angiotensin I-Converting Enzyme Gene Polymorphism, Type A Behavior Pattern and Coronary Heart Disease in Chinese The polymorphism of ACE gene and type A behavior pattern (TABP) survey were determined in 109 patients with CHD. The results showed the development of coronary heart disease(CHD) is influenced mainly by the behavioral attributes of competitiveness, achievement striving, hostility, being irritated easily and impatience; the deletion polymorphism of ACE gene may be play a important role in the process of it. 6. Correlation Analysis Between Type A Behavior Pattern Core Components and the Polymorphism of ACE Gene The polymorphism of ACE gene and type A behavior pattern (TABP) survey were determined in1306 Chinese healthy individuals. The results showed that there was a significant correlation between the scores of CH in TABP invertory and DD genotype of the ACE gene. Furthermore, the behavioral attributes of hostility, being irritated easily and impatience may be associated with heredity. At the end of this research, in terms of theory, the research approaches of TABP and the factors influenced the relationship between TABP and CHD were explored and discussed. Furthermore, several new opinions were put forward.

Avaliacao de genotipos de trigo em diferentes regioes triticolas do Parana, em solos com aluminio, na safra de 1996.

A avaliacao de cultivares de trigo no Parana, com fins de recomendacao, e realizada pelas Instituicoes: IAPAR, Embrapa Soja, COODETEC e Fundacao Agraria de Pesquisa, atraves da instalacao de ensaios de rendimento nas principais regioes triticolas do Estado. Sao relatados os resultados obtidos em 1996 de 17 experimentos do Ensaio Intermediario Paranaense (IPR), 25 experimentos do Centro-Sul Brasileiro (CSBR) e 24 experimentos do Ensaio em Cultivo (ECR), para solos com aluminio, instalados em Londrina, Faxinal, Campo Mourao, Cascavel, Pato Branco, Arapoti, Tibagi, Ponta Grossa e Guarapuava, representando as regioes Norte, Oeste, Sudoeste e Sul do Estado. Os rendimentos dos ensaios instalados em Faxinal foram prejudicados por chuva de granizo. Devido a pouca precipitação, os ensaio instalados em Londrina e Cascavel receberam irrigacao, para assegurar a emergencia uniforme das plantas. A ocorrencia de doencas foi muito baixa, principalmente nas regioes Norte e Oeste. No Sul e Sudoeste, onde a precipitacao foi mais elevada, ocorreu maior incidencia de doencas fungicas e os pesos do hectolitro foram menores. Em alguns experimentos obteve-se produtividade media superior a 5 t/ha, considerada elevada para o trigo. No ensaio IPR, foram promovidas, em funcao do rendimento e outras caracteristicas, as linhagens OC 962, OC 963, OC 968, ORL 93320, PF 90120 e PF 9293. No CSBR, destacaram-se e foram mantidas as linhagens OC 959, OC 9511, ORL 9285, PF 9099, PF 91205 e PG 9337. No ECR, destacaram-se, em mais de uma regiao, as cultivares EMBRAPA-27, OR 1, IAPAR 46, IAPAR 60, IAPAR 78 e T. BR 23.

Avaliacao de genotipos de trigo em diferentes regioes triticolas do Parana, em solos sem aluminio, na safra de 1996.

O estado do Parana apresenta uma diversidade de clima, com invernos irregulares em relacao a precipitacoes pluviometricas e ocorrencia de geadas, e tambem, com relacao aos tipos de solos, que influem na adaptacao e no desempenho dos genotipos de trigo. Em vista disto, ha necessidade de um maior numero de cultivares, com caracteristicas diferenciadas para serem utilizadas pelos produtores. O presente trabalho tem por objetivo avaliar, nas zonas A e B, em solos com ate 5% de saturacao de aluminio, os novos genotipos de trigo criados pelas diferentes instituicoes que desenvolvem trabalhos de melhoramento genetico de trigo. Esta avaliacao e realizada pelo Instituto Agronomico do Parana (IAPAR), pelo Centro Nacional de Pesquisa de Soja (Embrapa Soja) e pela Cooperativa Central de Desenvolvimento Tecnologico e Economico (COODETEC), atraves da instalacao de diferentes ensaios de competicao de genotipos. Os resultados aqui relatados sao resultantes de dez experimentos do Ensaio Intermediario Paranaense (IPS), doze experimentos do Ensaio Centro-Sul Brasileiro (CSBS) e onze experimentos do Ensaio de Cultivares em Cultivo (ECS), para solos com ate 5% de saturacao de aluminio, instalados em 1996, em diferentes epocas, nas localidade de Cambara, Londrina, Engenheiro Beltrao, Palotina e Sao Miguel do Iguacu. Devido a longa estiagem ocorrida no periodo de abril a julho, no Norte do estado (zona A1), alguns experimentos foram prejudicados e, outros perdidos. Em Londrina e Palotina, os experimentos receberam irrigacoes na fase inicial para propiciar uma boa germinacao e desenvolvimento das plantas. A incidencia de molestias foi baixa, em ambas as zonas predominando no entanto, uma razoavel infeccao de oidio, nas semeaduras mais tardias, e de ferrugem da folha. Observou-se uma variabilidade dos genotipos quanto ao grau de tolerancia e/ou suscetibilidade a estas molestias, como tambem, uma resposta no rendimento de graos ao controle destas, pelo uso de fungicidas especificos. Os rendimentos obtidos, em geral, foram muitos bons, alcancando, em alguns casos, a 6,7 t/ha. No ensaio IPS, em funcao do rendimento de graos e outras caracteristicas, foram selecionadas as linhagens IA 952, IWT 9430, LD 941, LD 946, OC 962, OC 963, OC 965, ORL 92203 e PR 961. NO CSBS, foram mantidas as linhagens IOR 90226 e PF 91450. No ECS, destacaram-se, em ambas as zonas, as cultivares IAPAR 60, IAPAR 78 e OR 1. Considerando os resultados de rendimentos de graos e outras caracteristicas agronomicas e, principalmente, a qualidade da farinha para panificacao, foram recomendadas como novas cultivares, as linhagens IDS 934-21 e OC 939, denominadas, respectivamente, de Manitoba 97 e COODETEC 101.

INFORMES da avaliação de genótipos de girassol, 1998/99 e 1999.

Caracteristicas gerais da rede oficial de avaliacao de genotipos de girassol; Resultados dos ensaios finais e intermediarios; Indicacao de genotipos.

Informes de avaliação de genótipos de girassol 2007/2008 e 2008.

Características Gerais da Rede de Ensaios de Avaliação de Genótipos de Girassol. Resultados dos Ensaios Finais de Primeiro e de Segundo Ano - safra 2007/2008 e safrinha 2008. Ensaio Final de Segundo Ano - safra 2007/2008: Encruzilhada do Sul (RS). Três de Maio (RS), Curitiba (PR), Leme do Prado (MG). Locais não considerados na análise conjunta. Análise conjunta. Ensaio Final de Primeiro Ano - safra 2007/2008: São Gabriel (RS), Santa Cruz do Sul (RS), Xaxim (SC), Jaguariúna (SP), Mocambinho (MG) Leme do Prado (MG), Roda Velha (BA), Ipanguaçú (RN). Locais não considerados na análise conjunta. Análise conjunta. Ensaio Final de Segundo Ano - safrinha 2008: Londrina (PR), Manduri (SP), Cravinhos (SP), Uberaba (MG), Muzambinho (MG), Rio Verde (GO), Planaltina (DF), Chapadão do Sul (MS), São José dos Quatro Marcos (MT), Campos de Julio (MT), Vilhena / Ensaio A (RO) Vilhena / Ensaio B (RO), Bom Jesus (PI). Locais não considerados na análise conjunta. Análise conjunta. Ensaio Final de Primeiro Ano - safrinha 2008: Londrina (PR), Jaboticabal (SP), Manduri (SP), Patos de Minas (MG), Planaltina (DF), Vilhena . Ensaio A (RO) Vilhena . Ensaio B (RO), Mata Roma (MA). Locais não considerados na análise conjunta. Análise conjunta. Lista dos genótipos de girassol avaliados e registrados no Ministério da Agricultura, Pecuária e Abastecimento - MAPA.

Informes da avaliação de genótipos de girassol 2008/2009 e 2009.

Características gerais da rede de ensaios de avaliação de genótipos de girassol. Resultados dos ensaios finais de primeiro e de segundo ando ? safra 2008/2009 e safrinha 2009. Ensaio final de segundo ano ? safra 2008/2009. Ensaio final de primeiro ano ? safra 2008/2009. Ensaio final de segundo ano - safrinha 2008. Ensaio final de primeiro ano ? safrinha 2008.

Avaliação de genótipos de girassol no Rio Grande do Sul - safras 2009/10 e 2010/11.

2011

Severidade de mancha de alternaria em genótipos de girassol no Cerrado do Distrito Federal.

RESUMO: Este trabalho teve como objetivo comparar a severidade da mancha de Alternaria de genótipos de girassol em ambientes do Cerrado do Distrito Federal. Três experimentos foram avaliados, dois na Embrapa Cerrados (Planaltina, DF) e um localizado na Embrapa Produtos e Mercado (Recanto das Emas, DF). Foram feitas análises ao longo do ciclo da cultura com um intervalo de 15 dias, sendo a primeira aos 35 dias após emergência. Cada planta foi analisada em três partes: terço inferior, terço médio e terço superior. Ao final de cada experimento, a área abaixo da curva de progresso da doença (AACPD) foi calculada para cada genótipo. De acordo com os resultados observados, o ambiente de sequeiro na Embrapa Cerrados, que deteve a maior média da severidade da doença, entre os ambientes avaliados. Dentre os genótipos avaliados, MG 360 mostrou menor severidade da doença no sequeiro e AGUARA 06 no irrigado da Embrapa Cerrados. O genótipo BSG 42 na Embrapa Produtos e Mercado, se destacou pela menor severidade do fungo. Houve influência significativa do ambiente nos resultados de severidade da doença, que está estreitamente relacionada com os fatores climáticos como temperatura e umidade relativa do ar. A compreensão dessas condições favoráveis ao desenvolvimento do fungo é essencial quando se avalia a resistência em genótipos de girassol. ABSTRACT: This study had the purpose of comparing the severity of Alternaria leaf spot on genotypes of sunflower in the Brazilian Cerrado. Three field trials were established, two at Embrapa Cerrados (Planaltina, DF) and one at Embrapa Produtos e Mercados (Recanto das Emas, DF). Evaluations were made during the crop cycle every 15 days, the first one happening 35 days after crop emergency. Each plant was analyzed in three parts: lower, middle and upper thirds. At the end of each trial the average area under the disease progress curve (AUDPC), for each third, was calculated for all genotypes. According to the observed results, the dryland environment at Embrapa Cerrados had the highest mean disease severity, among the studied environments. Between the evaluated genotypes, MG360 showed less severity in dryland and AGUARA 06 in the irrigated environment at Embrapa Cerrados. At Embrapa Produtos e Mercado the genotype that presented the best performance was BRS G42. Environmental conditions deeply affected the trials, mainly temperature and relative humidity. Their influence on Alternaria leaf spot epidemics in the Cerrado region must be studied in more detail, to avoid misinterpreting data when evaluating sunflower genotypes for resistance to this important fungal disease.

Avaliação do teor e produtividade de óleo em genótipos de girassol.

RESUMO: O presente trabalho teve como objetivo avaliar o teor e a produtividade de genótipos de girassol semeados em segunda safra no ano de 2014 em Campo Novo do Parecis ? MT, no campo experimental do Instituto Federal de Educação Ciência e Tecnologia de Mato Grosso. O delineamento experimental utilizado foi o de blocos casualizados, com 16 tratamentos (16 genótipos) e quatro repetições. As parcelas experimentais foram constituídas de 4 linhas com 6,5 m de comprimento, com espaçamento entrelinhas de 0,45 m, contendo área de 11,7 m², totalizando uma área de 748 m². Foi utilizada a população de 45000 plantas por hectare. Os dados foram submetidos à análise de variância e ao teste Scott-Knott, a 5% de probabilidade. Os genótipos que se destacaram em relação à produtividade de aquênios foram o MG 360, AGUARÁ 06, MG 305, AGUARÁ 04, CF 101, SYN 045, GNZ NEON, HELIO 251 e SYN 3950HO. Para o teor de óleo nos aquênios e produtividade de óleo, o genótipo MG 360 apresentou o maior valor e se destacou em relação aos demais genótipos analisados. ABSTRACT: This study aimed to evaluate genotypes of sunflower seeded second harvest in the year 2014 in Campus Campo Novo do Parecis, in the experimental field of the Instituto Federal de Educação Ciência e Tecnologia de Mato Grosso. The experimental design was a randomized block design with treatments 16 (16 genotypes) and four replications. The experimental plots consisted of four rows 6.5 m long with row spacing of 0.45 m, containing area of 11.7 m², totaling an area of 748 m². The population of 45000 plants per hectare is used. Data were subjected to analysis of variance and the Scott-Knott test at 5 % probability. The genotypes that stood out in relation to achenes productivity were MG 360, AGUARÁ 06, MG 305, AGUARÁ 04, CF 101, SYN 045, GNZ NEON, HELIO 251 and SYN 3950HO. For oil content and oil productivity, MG 360 genotype showed the highest value and stood out in relation to other genotypes.