The Coastal Barrier Island Network (CBIN): Future management strategies for barrier islands

Barrier islands are ecosystems that border coastal shorelines and form a protective barrier between continental shorelines and the wave action originating offshore. In addition to forming and maintaining an array of coastal and estuarine habitats of ecological and economic importance, barrier island coastlines also include some of the greatest concentrations of human populations and accompanying anthropogenic development in the world. These islands have an extremely dynamic nature whereby major changes in geomorphology and hydrology can occur over short time periods (i.e. days, hours) in response to extreme episodic storm events such as hurricanes and northeasters. The native vegetation and geological stability of these ecosystems are tightly coupled with one another and are vulnerable to storm-related erosion events, particularly when also disturbed by anthropogenic development. (PDF contains 4 pages)

Recent research in the African Great Lakes: fisheries, biodiversity and cichlid evolution

The East African Great Lakes are now well known for (1) their fisheries, of vital importance for their rapidly rising riparian human populations, and (2) as biodiversity hotspots with spectacular endemic faunas, of which the flocks of cichlid fishes unique to each of the three largest lakes, Tanganyika, Malawi and Victoria, offer unique opportunities to investigate how new species evolve and coexist. Since the early 1990s research involving over a hundred scientists, financed by many international bodies, has produced numerous reports and publications in widely scattered journals. This article summarizes their main discoveries and examines the status of, and prospects for, the fisheries, as well as current ideas on how their rich endemic fish faunas have evolved. It first considers fisheries projects in each of the three lakes: the deep rift valley lakes Tanganyika and Malawi and the huge Victoria, all of which share their waters between several East African countries. Secondly it considers the biodiversity surveys of each lake, based on underwater (SCUBA) observations of fish ecology and behaviour which have revealed threats to their fish faunas, and considers what conservation measures are needed. Thirdly, using the lakes as laboratories, what have the international investigations (including DNA techniques and follow-up aquarium experiments) now revealed about the origins and relationships of their cichlid species flocks and mechanisms of evolution?

Morfologia dentofacial e características oclusais dos índios Arara: revisitando o papel da hereditariedade e da dieta na etiologia da má oclusão

A influência da dieta e da hereditariedade nas características dentofaciais foi avaliada através do exame de duas populações indígenas amazônicas divididas por um processo de fissão linear. Os indígenas que constituem a aldeia Arara-Iriri são descendentes de um único casal expulso da aldeia Arara-Laranjal. O crescimento da aldeia Iriri ocorreu pelo acasalamento de parentes próximos, ratificado por um alto coeficiente de consanguinidade (F=0,25, p<0,001). A epidemiologia da má oclusão e das características da face foi analisada nos indivíduos entre dois e 22 anos, das aldeias Iriri (n=46) e Laranjal (n=130). A biometria da dentição e da face foi obtida em 55 indígenas em dentição permanente sem perdas dentárias, através da fotogrametria facial e dos modelos de gesso. O desgaste dentário foi examinado em 126 indivíduos através da análise de regressão múltipla. Os resultados revelaram uma determinação significativa da idade no desgaste dos dentes (R2=87,6, p<0,0001), que se mostrou semelhante entre as aldeias (R2=0,027, p=0,0935). Por outro lado, diferenças marcantes foram observadas nas características dentofaciais. Revelou-se uma face mais vertical (dolicofacial) entre os índios Iriri e o predomínio do tipo braquifacial nos indígenas da aldeia original, corroborado pela fotogrametria. Uma face sagitalmente normal foi observada em 97,7% da aldeia Laranjal, enquanto faces convexas (26,1%, RR-16,96) e côncavas (15,2%, RR=19,78) eram mais prevalentes na aldeia Iriri (p<0,001). A biprotrusão, com consequente redução do ângulo nasolabial, era uma característica comum entre os Arara, porém com maior prevalência no grupo Iriri (RP=1,52, p=0,0002). A prevalência da má oclusão foi significativamente mais alta na aldeia Iriri (RP= 1,75, p=0,0007). A maioria da população da aldeia original (83,8%) apresentou uma relação normal entre os arcos dentários, contudo, na aldeia resultante (Iriri), 34,6% dos indivíduos era Classe III (RP=6,01, p<0,001) e 21,7% era Classe II (RP=2,02, p=0,05). Enquanto nenhum caso de apinhamento e de sobremordida foi observado na aldeia Iriri, a razão da prevalência era 2,64 vezes maior para a mordida aberta anterior (p=0,003), 2,83 vezes (p<0,001) para a mordida cruzada anterior, 3,93 (p=0,03) para a sobressaliência aumentada, e de 4,71 (p=0,02) para a mordida cruzada posterior. Observou-se uma alta prevalência das perdas dentárias, sem diferença entre as aldeias (RP=1,46, p=0,11). O exame dos modelos revelou uma tendência de incisivos maiores e pré-molares e caninos menores na aldeia Iriri, delineando uma semelhança na massa dentária total entre as aldeias, que, aliada a arcadas dentárias maiores, justificaram o menor índice de irregularidade dos incisivos entre esses indígenas. Esses resultados minimizam a influência do desgaste dentário, uma evidência direta de como um indivíduo se alimentou no passado, no desenvolvimento dentofacial e enfatizam o predomínio da hereditariedade, através da endogamia, na etiologia da variação anormal da oclusão dentária e da morfologia da face.

Estudo da ancestralidade materna da população do Rio de Janeiro: análise do DNA mitocondrial

As porções uniparentais do genoma humano, representadas pelo cromossomo Y e pelo DNA mitocondrial (DNAmt), contêm informação genética relacionada às heranças patrilinear e matrilinear, respectivamente. Além da aplicabilidade em genética médica e forense, o DNAmt tem sido utilizado como um importante marcador molecular em estudos sobre evolução para traçar inferências filogenéticas e filogeográficas sobre as populações humanas. A análise de linhagens de DNAmt presentes em diferentes populações mundiais levou à identificação de haplogrupos reunindo diversos haplótipos específicos dos grandes grupos étnicos: africanos, europeus, asiáticos e nativos americanos. A população brasileira é conhecida como uma das mais heterogêneas do mundo, resultado do processo de colonização do país, abrangendo mais de cinco séculos de miscigenação entre povos de diferentes continentes. Este trabalho teve como objetivo estimar a partir da análise do DNA mitocondrial as proporções ancestrais africanas, européias e ameríndias na população do Rio de Janeiro. Para isso foram sequencidas as regiões hipervariáveis HVI e HVII do DNAmt de 109 indivíduos não relacionados geneticamente residentes no Rio de Janeiro. Os haplogrupos foram classificados de acordo com o conjunto de polimorfismos dos haplótipos individuais. Programas estatísticas foram utilizados para a determinação de parâmetros de diversidade genética e comparações populacionais. A diversidade haplotípica foi estimada em 0,9988. Nossos resultados demonstraram na população do Rio de Janeiro percentuais de cerca de 60%, 25% e 15% de ancestralidades maternas africana, ameríndia e européia, respectivamente. Através da análise de distâncias genéticas, evidenciou-se que a população do Rio de Janeiro está mais próxima das populações brasilerias dos estados de São Paulo e Alagoas. Como descrito nos registros históricos, algumas regiões do país tiveram processos de colonização muito específicos que se refletem nas proporções ancestrais maternas e paternas observadas. Em relação ao DNAmt, não se verificou diferença genética significativa entre as populações do Rio de Janeiro e a de Angola, uma população africana. Os resultados obtidos estão em estreita concordância com os registros históricos e outros estudos genéticos acerca da formação da população brasileira

Comparison of the Transcriptional Profiles of Melanocytes from Dark and Light Skinned Individuals under Basal Conditions and Following Ultraviolet-B Irradiation

We analysed the whole-genome transcriptional profile of 6 cell lines of dark melanocytes (DM) and 6 of light melanocytes (LM) at basal conditions and after ultraviolet-B (UVB) radiation at different time points to investigate the mechanisms by which melanocytes protect human skin from the damaging effects of UVB. Further, we assessed the effect of different keratinocyte-conditioned media (KCM+ and KCM-) on melanocytes. Our results suggest that an interaction between ribosomal proteins and the P53 signaling pathway may occur in response to UVB in both DM and LM. We also observed that DM and LM show differentially expressed genes after irradiation, in particular at the first 6h after UVB. These are mainly associated with inflammatory reactions, cell survival or melanoma. Furthermore, the culture with KCM+ compared with KCM- had a noticeable effect on LM. This effect includes the activation of various signaling pathways such as the mTOR pathway, involved in the regulation of cell metabolism, growth, proliferation and survival. Finally, the comparison of the transcriptional profiles between LM and DM under basal conditions, and the application of natural selection tests in human populations allowed us to support the significant evolutionary role of MIF and ATP6V0B in the pigmentary phenotype.

Biochemical biomarkers in samples processed by different methods in Environmental Specimen Banks

In the last decades the creation of new Environmental Specimen Banks (ESB) is increasing due to the necessity of knowing the effects of pollutants in both the environment and human populations. ESBs analyze and store samples in order to understand the effects of chemicals, emerging substances and the environmental changes in biota. For a correct analysis of the effect induced by these variables, there is a need to add biological endpoints, such as biomarkers, to the endpoints based on chemical approaches which have being used until now. It is essential to adapt ESB´s sampling strategies in order to enable scientists to apply new biological methods. The present study was performed to obtain biochemical endpoints from samples stored in the BBEBB (Biscay Bay Environmental Biospecimen Bank) of the Marine Station of Plentzia (PIE - UPV/EHU). The main objective of the present work was to study the variability caused in biochemical biomarkers by different processing methods in mussels (Mytilus galloprovincialis) from two localities (Plentzia and Arriluze) with different pollution history. It can be concluded that the selected biomarkers (glutathione S-transferase and acetylcholinesterase) can be accurately measured in samples stored for years in the ESBs. The results also allowed the discrimination of both sampling sites. However, in a further step, the threshold levels and baseline values should be characterized for a correct interpretation of the results in relation to the assessment of the ecosystem health status.

Estudo das características fenotípicas e genotípicas de amostras de Corynebacterium pseudotuberculosis

Uma vez que C. pseudotuberculosis é o agente etiológico de processos infecciosos em animais caprinos e ovinos e que também pode ser isolado de processos infecciosos em seres humanos as investigações direcionadas para a espécie em questão são necessárias, visto que a escassez de dados epidemiológicos e de conhecimento relativo ao comportamento do microrganismo em hospedeiros animais e humanos em nosso país dificulta o diagnóstico laboratorial da espécie, à semelhança do observado com outra espécie de transmissão zoonótica, o C. ulcerans. Uma preocupação adicional é o fato da espécie em questão também ser capaz de albergar bacteriófagos codificadores da toxina diftérica, representando uma ameaça à circulação dos bacteriófagos. Assim, o presente estudo tem como objetivo geral analisar as características fenotípicas e genotípicas de amostras de C. pseudotuberculosis. Neste sentido, foram propostos os seguintes objetivos: Avaliar as características bioquímicas das amostras através de testes bioquímicos convencionais; avaliar as características bioquímicas das amostras utilizando o sistema semi-automatizado API Coryne; diferenciar amostras de C. pseudotuberculosis de C. ulcerans utilizando a técnica de PCR multiplex; pesquisar a presença de gene tox. Os resultados demonstraram que amostras de C. diphtheriae, C. ulcerans e C. pseudotuberculosis podem ser caracterizadas por métodos bioquímicos convencionais e por taxonomia numérica (API Coryne System). C. ulcerans e C. pseudotuberculosis, com potencial de circulação zoonótica, da mesma forma que C. diphtheriae são capazes de albergar o gene da toxina diftérica. A reação m-PCR foi capaz de discernir as amostras de C. diphtheriae, C. ulcerans e C. pseudotuberculosis e ainda definir o potencial das amostras em produzir a toxina diftérica. Os dados enfatizam a necessidade da técnica multiplex PCR para o diagnostico e para o controle de espécies associadas a quadros de difteria em populações humana.

Genetic evidence supports demic diffusion of Han culture

The spread of culture and language in human populations is explained by two alternative models: the demic diffusion model, which involves mass movement of people; and the cultural diffusion model, which refers to cultural impact between populations and in

Molecular evolution of CXCR1, a G protein-coupled receptor involved in signal transduction of neutrophils

Human neutrophils are a type of white blood cell, which forms an early line of defense against bacterial infections. Neutrophils are highly responsive to the chemokine, interleukin-8 (IL-8) due to the abundant distribution of CXCR1, one of the IL-8 receptors on the neutrophil cell surface. As a member of the GPCR family, CXCR1 plays a crucial role in the IL-8 signal transduction pathway in neutrophils. We sequenced the complete coding region of the CXCR1 gene in worldwide human populations and five representative nonhuman primate species. Our results indicate accelerated protein evolution in the human lineage, which was likely caused by Darwinian positive selection. The sliding window analysis and the codon-based neutrality test identified signatures of positive selection at the N-terminal ligand/receptor recognition domain of human CXCR1.

The testis-specific apoptosis related gene TTL.6 underwent adaptive evolution in the lineage leading to humans

The TTL.6 gene is a member of the tubulin-tyrosine ligase (TTL) family involved in apoptosis and preferentially expressed in the testis. We sequenced the coding region and part of the introns of TTL.6 in world wide human populations and five representativ

A dependent partition-valued process for multitask clustering and time evolving network modelling

The fundamental aim of clustering algorithms is to partition data points. We consider tasks where the discovered partition is allowed to vary with some covariate such as space or time. One approach would be to use fragmentation-coagulation processes, but these, being Markov processes, are restricted to linear or tree structured covariate spaces. We define a partition-valued process on an arbitrary covariate space using Gaussian processes. We use the process to construct a multitask clustering model which partitions datapoints in a similar way across multiple data sources, and a time series model of network data which allows cluster assignments to vary over time. We describe sampling algorithms for inference and apply our method to defining cancer subtypes based on different types of cellular characteristics, finding regulatory modules from gene expression data from multiple human populations, and discovering time varying community structure in a social network.

Trade-offs between cancer and other diseases: do they exist and influence longevity?

Relationships between aging, disease risks, and longevity are not yet well understood. For example, joint increases in cancer risk and total survival observed in many human populations and some experimental aging studies may be linked to a trade-off between cancer and aging as well as to the trade-off(s) between cancer and other diseases, and their relative impact is not clear. While the former trade-off (between cancer and aging) received broad attention in aging research, the latter one lacks respective studies, although its understanding is important for developing optimal strategies of increasing both longevity and healthy life span. In this paper, we explore the possibility of trade-offs between risks of cancer and selected major disorders. First, we review current literature suggesting that the trade-offs between cancer and other diseases may exist and be linked to the differential intensity of apoptosis. Then we select relevant disorders for the analysis (acute coronary heart disease [ACHD], stroke, asthma, and Alzheimer disease [AD]) and calculate the risk of cancer among individuals with each of these disorders, and vice versa, using the Framingham Study (5209 individuals) and the National Long Term Care Survey (NLTCS) (38,214 individuals) data. We found a reduction in cancer risk among old (80+) men with stroke and in risk of ACHD among men (50+) with cancer in the Framingham Study. We also found an increase in ACHD and stroke among individuals with cancer, and a reduction in cancer risk among women with AD in the NLTCS. The manifestation of trade-offs between risks of cancer and other diseases thus depended on sex, age, and study population. We discuss factors modulating the potential trade-offs between major disorders in populations, e.g., disease treatments. Further study is needed to clarify possible impact of such trade-offs on longevity.

Reexamining the science of marine protected areas: Linking knowledge to action

Marine protected areas (MPAs) are often implemented to conserve or restore species, fisheries, habitats, ecosystems, and ecological functions and services; buffer against the ecological effects of climate change; and alleviate poverty in coastal communities. Scientific research provides valuable insights into the social and ecological impacts of MPAs, as well as the factors that shape these impacts, providing useful guidance or "rules of thumb" for science-based MPA policy. Both ecological and social factors foster effective MPAs, including substantial coverage of representative habitats and oceanographic conditions; diverse size and spacing; protection of habitat bottlenecks; participatory decisionmaking arrangements; bounded and contextually appropriate resource use rights; active and accountable monitoring and enforcement systems; and accessible conflict resolution mechanisms. For MPAs to realize their full potential as a tool for ocean governance, further advances in policy-relevant MPA science are required. These research frontiers include MPA impacts on nontarget and wide-ranging species and habitats; impacts beyond MPA boundaries, on ecosystem services, and on resource-dependent human populations, as well as potential scale mismatches of ecosystem service flows. Explicitly treating MPAs as "policy experiments" and employing the tools of impact evaluation holds particular promise as a way for policy-relevant science to inform and advance science-based MPA policy. © 2011 Wiley Periodicals, Inc.

Neuronal Survival of the Fittest: The Importance of Aerobic Capacity in Exercise-Induced Neurogenesis and Cognition

It is commonly accepted that aerobic exercise increases hippocampal neurogenesis, learning and memory, as well as stress resiliency. However, human populations are widely variable in their inherent aerobic fitness as well as their capacity to show increased aerobic fitness following a period of regimented exercise. It is unclear whether these inherent or acquired components of aerobic fitness play a role in neurocognition. To isolate the potential role of inherent aerobic fitness, we exploited a rat model of high (HCR) and low (LCR) inherent aerobic capacity for running. At a baseline, HCR rats have two- to three-fold higher aerobic capacity than LCR rats. We found that HCR rats also had two- to three- fold more young neurons in the hippocampus than LCR rats as well as rats from the heterogeneous founder population. We then asked whether this enhanced neurogenesis translates to enhanced hippocampal cognition, as is typically seen in exercise-trained animals. Compared to LCR rats, HCR rats performed with high accuracy on tasks designed to test neurogenesis-dependent pattern separation ability by examining investigatory behavior between very similar objects or locations. To investigate whether an aerobic response to exercise is required for exercise-induced changes in neurogenesis and cognition, we utilized a rat model of high (HRT) and low (LRT) aerobic response to treadmill training. At a baseline, HRT and LRT rats have comparable aerobic capacity as measured by a standard treadmill fit test, yet after a standardized training regimen, HRT but not LRT rats robustly increase their aerobic capacity for running. We found that sedentary LRT and HRT rats had equivalent levels of hippocampal neurogenesis, but only HRT rats had an elevation in the number of young neurons in the hippocampus following training, which was positively correlated with accuracy on pattern separation tasks. Taken together, these data suggest that a significant elevation in aerobic capacity is necessary for exercise-induced hippocampal neurogenesis and hippocampal neurogenesis-dependent learning and memory. To investigate the potential for high aerobic capacity to be neuroprotective, doxorubicin chemotherapy was administered to LCR and HCR rats. While doxorubicin induces a progressive decrease in aerobic capacity as well as neurogenesis, HCR rats remain at higher levels on those measures compared to even saline-treated LCR rats. HCR and LCR rats that received exercise training throughout doxorubicin treatment demonstrated positive effects of exercise on aerobic capacity and neurogenesis, regardless of inherent aerobic capacity. Overall, these findings demonstrate that inherent and acquired components of aerobic fitness play a crucial role not only in the cardiorespiratory system but also the fitness of the brain.

Impacts of climate change on marine ecosystem production in societies dependent on fisheries

Growing human populations and changing dietary preferences are increasing global demands for fish, adding pressure to concerns over fisheries sustainability. Here we develop and link models of physical, biological and human responses to climate change in 67 marine national exclusive economic zones, which yield approximately 60% of global fish catches, to project climate change yield impacts in countries with different dependencies on marine fisheries. Predicted changes in fish production indicate increased productivity at high latitudes and decreased productivity at low/mid latitudes, with considerable regional variations. With few exceptions, increases and decreases in fish production potential by 2050 are estimated to be <10% (mean C3.4%) from present yields. Among the nations showing a high dependency on fisheries, climate change is predicted to increase productive potential in West Africa and decrease it in South and Southeast Asia. Despite projected human population increases and assuming that per capita fish consumption rates will be maintained1, ongoing technological development in the aquaculture industry suggests that projected global fish demands in 2050 could be met, thus challenging existing predictions of inevitable shortfalls in fish supply by the mid-twenty-first century. This conclusion, however, is contingent on successful implementation of strategies for sustainable harvesting and effective distribution of wild fish products from nations and regions with a surplus to those with a deficit. Changes in management effectiveness2 and trade practices5 will remain the main influence on realized gains or losses in global fish production.