Rare and fleeting: an example of interspecific recombination in animal mitochondrial DNA

Recombination is thought to occur only rarely in animal mitochondrial DNA ( mtDNA). However, detection of mtDNA recombination requires that cells become heteroplasmic through mutation, intramolecular recombination or ' leakage' of paternal mtDNA. Interspecific hybridization increases the probability of detecting mtDNA recombinants due to higher levels of sequence divergence and potentially higher levels of paternal leakage. During a study of historical variation in Atlantic salmon ( Salmo salar) mtDNA, an individual with a recombinant haplotype containing sequence from both Atlantic salmon and brown trout ( Salmo trutta) was detected. The individual was not an F1 hybrid but it did have an unusual nuclear genotype which suggested that it was a later-generation backcross. No other similar recombinant haplotype was found from the same population or three neighbouring Atlantic salmon populations in 717 individuals collected during 1948 - 2002. Interspecific recombination may increase mtDNA variability within species and can have implications for phylogenetic studies.

Analytic approximations for multi-asset option pricing

We derive general analytic approximations for pricing European basket and rainbow options on N assets. The key idea is to express the option’s price as a sum of prices of various compound exchange options, each with different pairs of subordinate multi- or single-asset options. The underlying asset prices are assumed to follow lognormal processes, although our results can be extended to certain other price processes for the underlying. For some multi-asset options a strong condition holds, whereby each compound exchange option is equivalent to a standard single-asset option under a modified measure, and in such cases an almost exact analytic price exists. More generally, approximate analytic prices for multi-asset options are derived using a weak lognormality condition, where the approximation stems from making constant volatility assumptions on the price processes that drive the prices of the subordinate basket options. The analytic formulae for multi-asset option prices, and their Greeks, are defined in a recursive framework. For instance, the option delta is defined in terms of the delta relative to subordinate multi-asset options, and the deltas of these subordinate options with respect to the underlying assets. Simulations test the accuracy of our approximations, given some assumed values for the asset volatilities and correlations. Finally, a calibration algorithm is proposed and illustrated.

D. H. Lawrence and the publication of Look! We Have Come Through!

In 1917 D.H. Lawrence's whole outlook on the social and cultural environment of his country was embodied in his attitude towards the literary marketplace. The suppression of The Rainbow in 1915 and his opposition to the war contributed to his feeling of detachment from what he called ‘the bourgeois world, the world which controls press, publication and all’. Presenting new archival evidence, this article examines the publishing history of the poetry volume Look! We Have Come Through, issued by Chatto & Windus in 1917. Closer examination of the motives of the individual editors involved in the production of the volume reveals why Lawrence was required to make changes to his text but also why the firm were eager to publish a volume that was to have little commercial impact. Issued at a critical moment in Lawrence's relationship with the marketplace, and in the history of literary modernism, the episode shows how, in spite of general hostility to his work, there were forces in the mainstream publishing market that were keen to embrace modern literary forms and take risks with the work of authors whose subject-matter was challenging and potentially dangerous.

G6f-like is an ITAM-containing collagen receptor in thrombocytes

Collagen activates mammalian platelets through a complex of the immunoglobulin (Ig) receptor GPVI and the Fc receptor γ-chain, which has an immunoreceptor tyrosine-based activation motif (ITAM). Cross-linking of GPVI mediates activation through the sequential activation of Src and Syk family kinases and activation of PLCγ2. Nucleated thrombocytes in fish are activated by collagen but lack an ortholog of GPVI. In this study we show that collagen activates trout thrombocytes in whole blood and under flow conditions through a Src kinase driven pathway. We identify the Ig receptor G6f-like as a collagen receptor and demonstrate in a cell line assay that it signals through its cytoplasmic ITAM. Using a morpholino for in vivo knock-down of G6f-like levels in zebrafish, we observed a marked delay or absence of occlusion of the venous and arterial systems in response to laser injury. Thus, G6f-like is a physiologically relevant collagen receptor in fish thrombocytes which signals through the same ITAM-based signalling pathway as mammalian GPVI, providing a novel example of convergent evolution.

An imaginary potential with universal normalization for dissipative processes in heavy-ion reactions

In this work we present new coupled channel calculations with the Sao Paulo potential (SPP) as the bare interaction, and an imaginary potential with system and energy independent normalization that has been developed to take into account dissipative processes in heavy-ion reactions. This imaginary potential is based on high-energy nucleon interaction in nuclear medium. Our theoretical predictions for energies up to approximate to 100 MeV/nucleon agree very well with the experimental data for the p, n + nucleus, (16)O + (27)Al, (16)O + (60)Ni, (58)Ni + (124)Sn, and weakly bound projectile (7)Li + (120)Sn systems. (C) 2008 Elsevier B.V. All rights reserved.

Refugees and residents: densities and habitat preferences of lorikeets in urban Melbourne

Lorikeet densities were measured across four habitat types in urban Melbourne. Musk Glossopsitta concinna and Rainbow Lorikeets Trichoglossus haematodus were shown to preferentially use established streetscapes with predominantly native vegetation. The high densities of Musk Lorikeets recorded possibly reflect a paucity of flowering in Victorian BoxIronbark forests during the autumnlwinter of 2002 and the availability of supplementary nectar resources in the urban environment. Future planting decisions in recently developed streetscapes will dictate the long-term resource potential for lorikeets and other nectarivores in urban Melbourne.

Preliminary observations on the tank and pond culture of the glass eels of the Australian shortfin eel, Anguilla Australis Richardson

There is expanding interest in the culture of the Australian shortfin eel Anguilla australis Richardson; however, there is a lack of fundamental biology and husbandry information necessary to further develop an industry within Australia. The present study was undertaken to gain a preliminary understanding of basic husbandry requirements for rearing of juvenile A. australis (glass eels and elvers) in tanks and earthen ponds. Newly caught glass eels were successfully acclimated to culture conditions. During tank culture trials, specific growth rates (SGR) and survival rates ranged from −2.1 to 2.8% day⁻¹ and 52% to 100% respectively. Glass eels weaned onto a commercial eel diet exhibited a significantly greater SGR and survival rate than those weaned onto a commercial trout diet. Glass eels weaned onto an eel diet over a 15-day period grew slightly faster than eels weaned over a 5-day period, but survival rates were not significantly different for each treatment. SGRs (up to 2.8% day⁻¹) were significantly higher for glass eels fed at 9 and 12% day⁻¹ than at 6% day⁻¹. Stocking densities between 2.5 kg m⁻³ and 30 kg m⁻³ did not influence either SGR or survival rates. SGRs were significantly higher for glass eels cultured at 25 °C than at lower temperatures. During pond culture trials, SGRs and survival rates ranged from 1.36 to 1.65% day⁻¹ and 39% to 77% respectively. The SGR and survival rates of juvenile eels stocked into ponds receiving supplementary feeding with a commercial eel diet were not significantly different to those of eels stocked into ponds that did not receive supplementary feeding.

Comparison of the color stability and lipid oxidative stability of fresh vacuum packaged lamb muscle containing elevated omega-3 and omega-6 fatty acid levels from dietary manipulation

A series of three experiments were conducted with second cross ([Merino×Border Leicester]×Poll Dorset) wether lambs to evaluate the effects of dietary treatments on manipulation of muscle long-chain (LC) omega-3 fatty acids (FA) on the color stability and oxidative stability of fresh and vacuum packaged lamb. At the end of 7-, 6- and 6-week experimental periods for experiments (Exp.) 1–3 respectively, lambs were slaughtered at a commercial abattoir. At 24 h post-mortem, muscle longissimus lumborum (LL) and longissimus thoracis (LT) were removed and evaluated for color and lipid oxidative stability under specified commercial storage and display condition. Of the dietary supplements used, fish meal and fish oil moderately (P<0.01) and markedly (P<0.001) increased muscle omega-3 FA content, while both protected canola seed (P<0.001) and protected sunflower meal protein significantly (P<0.02) increased muscle omega-6 FA content or ratio of omega-6/omega-3 of the longissimus muscle. In all experiments, the substantial increase (P<0.001) in muscle LC omega-3 and omega-6 FA had no consistent significant effect on color values (redness (a*), yellowness (b*) and lightness (L*)) for fresh and vacuum packaged lamb over a 6-day display period. Lipid oxidation, determined by the levels of thiobarbituric acid reactive substances (TBARS) indicated the enrichment of muscle polyunsaturated fatty acid (PUFA) levels in lambs did not produce significant differences resulting either from main treatment effects or for treatment×day×type interactions (where type was fresh and vacuum packaged). Present results demonstrated the color and lipid oxidative stability of lamb longissimus muscle during refrigerated display was not affected by enhanced levels of omega-3 and omega-6 FA due to dietary treatments.

Comparison of the color stability and lipid oxidative stability of fresh and vacuum packaged lamb muscle containing elevated omega-3 and omega-6 fatty acid levels from dietary manipulation

A series of three experiments were conducted with second cross ([Merino×Border Leicester]×Poll Dorset) wether lambs to evaluate the effects of dietary treatments on manipulation of muscle long-chain (LC) omega-3 fatty acids (FA) on the color stability and oxidative stability of fresh and vacuum packaged lamb. At the end of 7-, 6- and 6-week experimental periods for experiments (Exp.) 1–3 respectively, lambs were slaughtered at a commercial abattoir. At 24 h post-mortem, muscle longissimus lumborum (LL) and longissimus thoracis (LT) were removed and evaluated for color and lipid oxidative stability under specified commercial storage and display condition. Of the dietary supplements used, fish meal and fish oil moderately (P<0.01) and markedly (P<0.001) increased muscle omega-3 FA content, while both protected canola seed (P<0.001) and protected sunflower meal protein significantly (P<0.02) increased muscle omega-6 FA content or ratio of omega-6/omega-3 of the longissimus muscle. In all experiments, the substantial increase (P<0.001) in muscle LC omega-3 and omega-6 FA had no consistent significant effect on color values (redness (a*), yellowness (b*) and lightness (L*)) for fresh and vacuum packaged lamb over a 6-day display period. Lipid oxidation, determined by the levels of thiobarbituric acid reactive substances (TBARS) indicated the enrichment of muscle polyunsaturated fatty acid (PUFA) levels in lambs did not produce significant differences resulting either from main treatment effects or for treatment×day×type interactions (where type was fresh and vacuum packaged). Present results demonstrated the color and lipid oxidative stability of lamb longissimus muscle during refrigerated display was not affected by enhanced levels of omega-3 and omega-6 FA due to dietary treatments.

Comparison of the color stability and lipid oxidative stability fo fresh and vacuum packaged lamb muscle containing elevated omega-3 and omega-6 fatty acid levels from dietary manipulation

A series of three experiments were conducted with second cross ([Merino×Border Leicester]×Poll Dorset) wether lambs to evaluate the effects of dietary treatments on manipulation of muscle long-chain (LC) omega-3 fatty acids (FA) on the color stability and oxidative stability of fresh and vacuum packaged lamb. At the end of 7-, 6- and 6-week experimental periods for experiments (Exp.) 1–3 respectively, lambs were slaughtered at a commercial abattoir. At 24 h post-mortem, muscle longissimus lumborum (LL) and longissimus thoracis (LT) were removed and evaluated for color and lipid oxidative stability under specified commercial storage and display condition. Of the dietary supplements used, fish meal and fish oil moderately (P<0.01) and markedly (P<0.001) increased muscle omega-3 FA content, while both protected canola seed (P<0.001) and protected sunflower meal protein significantly (P<0.02) increased muscle omega-6 FA content or ratio of omega-6/omega-3 of the longissimus muscle. In all experiments, the substantial increase (P<0.001) in muscle LC omega-3 and omega-6 FA had no consistent significant effect on color values (redness (a*), yellowness (b*) and lightness (L*)) for fresh and vacuum packaged lamb over a 6-day display period. Lipid oxidation, determined by the levels of thiobarbituric acid reactive substances (TBARS) indicated the enrichment of muscle polyunsaturated fatty acid (PUFA) levels in lambs did not produce significant differences resulting either from main treatment effects or for treatment×day×type interactions (where type was fresh and vacuum packaged). Present results demonstrated the color and lipid oxidative stability of lamb longissimus muscle during refrigerated display was not affected by enhanced levels of omega-3 and omega-6 FA due to dietary treatments.

Rearing juvenile Australian native percichthyid fish in fertilised earthen ponds

The post-larvae and fry of Australian native species, including those of species belonging to the family Percichthyidae, are routinely reared to a fingerling size (35-55 mm in length) in fertilised earthen fry rearing ponds. The juveniles of Murray cod (Maccullochella peelii peelii\ trout cod (Maccullochella macquariensis) and Macquarie perch (Macquaria australasicd) (Percichthyidae) are grown in fry rearing ponds at the Marine and Freshwater Resources Institute, Snobs Creek (Vie. Australia) for production of fingerlings for stock enhancement and aquaculture purposes. However, no detailed studies have been undertaken of the productivity of these ponds and factors that influence fish production. An ecologically based study was undertaken to increase the knowledge of pond ecology and dynamics, particularly in relation to the rearing of juvenile Murray cod, trout cod and Macquarie perch in ponds. Over nine consecutive seasons commencing in 1991, water chemistry, plankton, macrobenthos (2 seasons only) and fish were monitored and studied in five ponds located at Snobs Creek. A total of 80 pond fillings were undertaken during the study period. Additional data collected from another 24 pond fillings undertaken at Snobs Creek collected prior to this study were included in some analyses. Water chemistry parameters monitored in the ponds included, temperature, dissolved oxygen pH, ammonia, nitrite, nitrate, orthophosphate and alkalinity. Water chemistry varied spatially (within and between ponds) and temporally (diurnally, daily and seasonally). Liming of ponds increased the total alkalinity to levels that were considered to be suitable for enhancing plankton communities and fish production. Water quality within the ponds for the most part was suitable for the rearing of juvenile Murray cod, trout cod and Macquarie perch, as reflected in overall production (growth, survival and yield) from the ponds. However, at times some parameters reached levels which may have stressed fish and reduced growth and survival, in particular, low dissolved oxygen concentrations (minimum 1.18 mg/L), high temperatures (maximum 34°C), high pH (maximum 10.38) and high unionised ammonia (maximum 0.58 mg/L). Species belonging to 37 phytoplankton, 45 zooplankton and 17 chironomid taxa were identified from the ponds during the study. In addition, an extensive checklist of aquatic flora and fauna, recorded from aquaculture ponds in south-eastern Australia, was compiled. However, plankton and benthos samples were usually numerically dominated by a few species only. Rotifers (especially Filinia, Brachionus, Polyarthra, and Asplanchnd), cladocerans (Moina and Daphnid) and copepods (Mesocyclops and Boeckelld) were most abundant and common in the plankton, while chironomids (Chironomus, Polypedilum, and Prodadius) and oligochaetes were most common and abundant in the benthos. Both abundance and species composition of the plankton and macrobenthos varied spatially (within and between ponds) and temporally (diurnally, daily and seasonally). Chlorophyll a concentrations, which ranged from 1.8 to 184 \ig/L (mean 29.37 ng/L), initially peaked within two weeks of filling and fertilising the ponds. Zooplankton peaked in abundance 2-4 weeks after filling the ponds. The maximum zooplankton density recorded in the ponds was 6,621 ind./L (mean 721 ind./L). Typically, amongst the zooplankton, rotifers were first to develop high densities (2nd-3rd week after filling), followed by cladocerans (2nd-4th week after filling) then copepods (2nd-5th week after filling). Chironomid abundance on average peaked later (during the 5th week after filling). The maximum chironomid density recorded in the ponds was 27,470 ind./m2 (mean 4,379 ind./m2). Length-weight, age-weight and age-length relationships were determined for juvenile Murray cod, trout cod and Macquarie perch reared in ponds. These relationships were most similar for Murray cod and trout cod, which are more closely related phylogenetically and similar morphologically than Macquarie perch. Growth of fish was negatively correlated with both size at stocking and stocking biomass. Stocking density experiments showed that, at higher densities, growth offish was significantly reduced, but survival was not affected. The diets of juvenile Murray cod trout cod and Macquarie perch reared in fry ponds were similar. The cladocerans Moina and Daphnia, adult calanoid and cyclopoid copepods and the chironomids, Chironomus, Polypedilum and Procladius were the most commonly occurring and abundant prey. Selection for rotifers and copepod nauplii was strongly negative for all three species of fish. Size range of prey consumed was positively correlated with fish size for trout cod and Macquarie perch, but not for Murray cod. Diet composition changed as the fish grew. Early after stocking the fish into the ponds, Moina was generally the more common prey consumed, while in latter weeks, copepods and chironomids became more abundant and common in the diet. On a dry weight basis, chironomid larvae were the most important component in the diets of these fish species. Selective feeding by fish on larger planktonic species such as adult copepods and cladocerans, may have influenced the plankton community structure as proposed by the trophic cascade or top -down hypothesis. The proximate composition and energy content of Murray cod, trout cod and Macquarie perch, reared in the ponds did not vary significantly between the species, and few significant changes were observed as the fish grew. These results suggested that the nutrient requirements of these species might not vary over the size range of fish examined. Significant differences in the proximate composition of prey were observed between species, size of species and time of season. The energy content of prey (cladocerans, copepods and chironomids) on a pond basis, was closely related to the abundance of these taxa in the ponds. Data collected from all pond fillings during the present study, along with historical data from pond fillings undertaken prior to this study, were combined in a data matrix and analysed for interactions between pairs of parameters. In particular, interactions between selected water chemistry parameters, zooplankton and chironomid abundance indicators were analysed to identify key factors that influence fish production (growth, survival, condition and yield). Significant correlations were detected between fish production indicators and several water chemistry and biota (zooplankton and chironomids) parameters. However, these were not consistent across all three species of fish. These results indicated that the interactions between water chemistry, biota and fish were complex, and that combinations of these parameters, along with other factors not included in the present study, may influence fish production in these ponds. The present study, showed that more stringent monitoring of fry rearing ponds, especially water quality, zooplankton and benthos communities and fish, combined with an associated increase in understanding of the pond ecosystem, can lead to substantial improvements in pond productivity and associated fish production. In the present study this has resulted in a general increase in fish survival rates, which became less variable or more predictable in nature. The value of such knowledge can provide managers with a more predicative capacity to estimate production of ponds in support of stock enhancement programs and provision of juvenile for aquaculture grow-out.

When more is less : urban remnants support high bird abundance but diversity varies

Urban remnant vegetation, especially where it occurs in public parks, allows for relatively easy access for ongoing biodiversity monitoring. However, relatively little baseline information on bird species distribution and abundance across a range of identifiable urban remnants appears in the published literature. We surveyed the relative abundance and distribution of birds across urban and suburban remnant vegetation in Melbourne, Australia. One hundred and six species were recorded, of which 98 were indigenous. Red wattlebirds had the highest mean relative abundance with 2.94 birds/ha, followed by rainbow lorikeets (2.51), noisy miners (1.93), brown thornbills (1.75) and spotted doves (0.96). There was no obvious trend between overall relative abundance and the size of the remnant, in contrast to species richness which was positively correlated with remnant size. The data revealed that some species were either totally restricted to, or more abundant in, larger remnants and generally absent from smaller remnants. Some of the more common birds (crimson rosella, superb fairy-wren, spotted pardalote and black-faced cuckoo-shrike) recorded during this study were detected at similar densities to those found in comparable vegetation to the east of Melbourne within a largely forested landscape. Other species occurred at much lower densities (e.g., white-browed scrubwren, brown thornbill, eastern yellow robin and grey fantail) or had habitat requirements or ecological characteristics that could place them at risk of further decline or local extinction in the urban area. We identify a suite of bird species of potential conservation concern within Melbourne’s urban landscape. The establishment of repeatable, fixed-point, and long-term monitoring sites will allow for repeat surveying over time and provide an early warning of population declines, or conversely an indication of population increase for other species.

Ontogeny of energy allocation reveals selective pressure promoting risk-taking behaviour in young fish cohorts

Given limited food, prey fishes in a temperate climate must take risks to acquire sufficient reserves for winter and/or to outgrow vulnerability to predation. However, how can we distinguish which selective pressure promotes risk-taking when larger body size is always beneficial? To address this question, we examined patterns of energy allocation in populations of age-0 trout to determine if greater risk-taking corresponds with energy allocation to lipids or to somatic growth. Trout achieved maximum growth rates in all lakes and allocated nearly all of their acquired energy to somatic growth when small in early summer. However, trout in low-food lakes took greater risks to achieve this maximal growth, and therefore incurred high mortality. By late summer, age-0 trout allocated considerable energy to lipids and used previously risky habitats in all lakes. These results indicate that: (i) the size-dependent risk of predation (which is independent of behaviour) promotes risk-taking behaviour of age-0 trout to increase growth and minimize time spent in vulnerable sizes; and (ii) the physiology of energy allocation and behaviour interact to mediate growth/mortality trade-offs for young animals at risk of predation and starvation.