Size-selective fishing drives species composition in the Celtic Sea

Fishing alters community size structure by selectively removing larger individual fish and by changing the relative abundance of different-sized species. To assess the relative importance of individual-and species-level effects, two indices of fish community structure were compared, the relative abundance of large fish individuals (large fish indicator, LFI) and the relative abundance of large fish species (large species indicator, LSI). The two indices were strongly correlated for empirical data from the Celtic Sea and for data from simulated model communities, suggesting that much of the variability in the LFI is caused by shifts in the relative abundance of species (LSI). This correlation is explained by the observation that most of the biomass of a given species is spread over few length classes, a range spanning the factor 2 of individual length, such that most species contributed predominantly to either the small or the large component of the LFI. The results suggest that the effects of size-selective fishing in the Celtic Sea are mediated mainly through changes in community composition.

Why the size structure of marine communities can require decades to recover from fishing

A dynamic food-web model of more than 1000 species was used to quantify the recovery trajectory of marine community size-structure under different hypothetical fishing regimes, using the Northeast Atlantic as an example. Size-structure was summarised by four indicators: the Large Fish Indicator (LFI), the Large Species Indicator (LSI), the biomass-weighted mean maximum length of fish species (EMBED Equation.3) and the biomass-weighted mean maturation length of fish species (EMBED Equation.3). Time-series of these indicators recorded recovery following release from fishing with various size-selectivities, intensities and durations. In model simulations, fishing-induced trophic cascades were observed to distort fish community size-structure, but these did not have a large influence on recovery level or duration as measured by the four indicators. However, simulations showed that local extinctions of large fish species increased in number with both fishing intensity and duration, and could strongly limit the recovery level. Recovery of fish community size-structure to near equilibrium frequently took multiple decades in simulations; these long transient periods suggest that management interventions for size-structure recovery may require much longer than previously thought. Our results demonstrate the need for community-level modelling to set realistic targets for management of community size-structure.

Coprolites from the Cretaceous Bearpaw Formation of Saskatchewan

Coprolites from the Beechy Member of the Cretaceous Bearpaw Formation, southern Saskatchewan, presumably deposited by one or more species of mosasaur or large fish/shark, were recovered and analyzed using SEM/EDS. The data reveal the presence of pseudomorphous coccoid bacteria, potential filamentous bacteria, bacterial endospores and filamentous fungi. No recorded fossil plant or bone material could be identified, either within the highly compressed coprolitic mat-flattened full coprolite bolus - of recovered marine sediment encased in a mixed mat of hematite-apatite primary minerals heavily coated with Ca-smectite and nontronite, or the full coprolite bolus. The presence of fossil bacteria with morphological characteristics similar to those of endospores in other environments suggests that only robust microbial forms such as these survive diagenesis, partly with some carbon still intact, the remainder replaced with silica and iron. The data support the view that coprolites can serve as a useful source of information on the ancient microbial world. © 2012 Elsevier Ltd.

Effects of nutrient and light enrichment on phytoplankton growth

Alterations of freshwater flow regimes and increasing eutrophication lead to alterations in light availability and nutrient loading into adjacent estuaries and coastal areas. Phytoplankton community respond to these changes in many ways. Harmful phytoplankton blooms, for instance, may be a consequence of changes in nutrient supply, as well as the replacement of some phytoplankton species (like diatoms, that contribute for the development of large fish and shellfish populations) by ohers (like cyanobacteria, that may be toxic and represent an undesirable food source for higher trophic levels). Nutrient and light enrichment experiments allow us to understand and predict the effects of eutrophication on the growth of phytoplankton. This is a fundamental tool in water management issues, since it enables the prediction of changes in the phytoplankton community that may be harmful to the whole ecosystem, and the design of mitigation strategies (Zalewski 2000).

Recent changes to the biogeochemistry of Muchalat Inlet, B.C., and the implications for HABs

Senior thesis written for Oceanography 445

Above- and below-ground vertebrate herbivory may each favour a different subordinate species in an aquatic plant community

At least two distinct trade-offs are thought to facilitate higher diversity in productive plant communities under herbivory. Higher investment in defence and enhanced colonization potential may both correlate with decreased competitive ability in plants. Herbivory may thus promote coexistence of plant species exhibiting divergent life history strategies. How different seasonally tied herbivore assemblages simultaneously affect plant community composition and diversity is, however, largely unknown. Two contrasting types of herbivory can be distinguished in the aquatic vegetation of the shallow lake Lauwersmeer. In summer, predominantly above-ground tissues are eaten, whereas in winter, waterfowl forage on below-ground plant propagules. In a 4-year exclosure study we experimentally separated above-ground herbivory by waterfowl and large fish in summer from below-ground herbivory by Bewick’s swans in winter. We measured the individual and combined effects of both herbivory periods on the composition of the three-species aquatic plant community. Herbivory effect sizes varied considerably from year to year. In 2 years herbivore exclusion in summer reinforced dominance of Potamogeton pectinatus with a concomitant decrease in Potamogeton pusillus, whereas no strong, unequivocal effect was observed in the other 2 years. Winter exclusion, on the other hand, had a negative effect on Zannichellia palustris, but the effect size differed considerably between years. We suggest that the colonization ability of Z. palustris may have enabled this species to be more abundant after reduction of P. pectinatus tuber densities by swans. Evenness decreased due to herbivore exclusion in summer. We conclude that seasonally tied above- and below-ground herbivory may each stimulate different components of a macrophyte community as they each favoured a different subordinate plant species.

Mídia impressa e meio ambiente: um estudo da cobertura da mortandade de peixes no estuário do Rio Potengi, Natal-RN

Environmental issues are becoming increasingly habitual to the media, particularly when calamities are involved. A feature of environmental disasters is that they disclose both environmental crises and the media limitation in reporting them. The research tried to contribute to the subject through the study of press media coverage of a large fish kill along an estuary in the State of Rio Grande do Norte, Brazil, in 2007. Thematic content analysis of newspaper reports identified the predominance of a superficial and denunciative coverage, lacking an educational perspective, and with little contribution to formation of a critical sense in readers. It also has identified the precarious treatment of those scientific concepts that could substantiate the actual causes of mortality of tons of aquatic fauna

A ictiofauna no monitoramento da qualidade ambiental em um distrito industrial do estuário amazônico

Vila do Conde está localizada no município de Barcarena, Pará, Brasil. Nesta região está concentrado um importante pólo industrial de mineração, constituindo um fator de risco para a qualidade da água. Diante do exposto, este trabalho teve o objetivo de avaliar a qualidade da água no ambiente estuarino localizado no entorno de Vila do Conde utilizando a ictiofauna como bioindicador e o fígado de duas espécies de peixes como biomarcador histopatológico. As coletas do material abiótico (água) e da ictiofauna ocorreram em três áreas considerando os diferentes níveis de impacto: Zona 1, localizado no entorno do terminal portuário e industrial de Vila do Conde, considerada como alto risco de contaminação; Zona 2, localizada na ilha do Capim, na divisa dos municípios de Barcarena e Abaetetuba, classificada com risco médio de impacto; Zona 3, localizada na ilha das Onças, município de Barcarena, classificada com risco minímo por está distante das fontes de contaminação. Para todas as áreas de estudo foram feitas amostragens tanto no ambiente de canal quanto no canal de maré ao longo de quatro coletas bimestrais -, transição chuvoso para o seco (Junho 2009), seco (Setembro 2009), transição seco para chuvoso (Janeiro 2010) e período chuvoso (Abril 2010), no período de um ano de coleta. Para a obtenção dos dados foram utilizados rede de emalhar e rede de tapagem. Como forma de abordar diferentes vertentes sobre a qualidade da água em Vila do Conde, este trabalho foi dividido em etapas. A primeira etapa consistiu do uso da ictiofauna como bioindicadora (capítulo 1). Na segunda etapa foram selecionadas duas espécies abundantes com hábitos alimentares distintos, Plagioscion squamosissimus e Lithodoras dorsalis, para avaliar a saúde do ambiente através da utilização do fígado como iomarcador histopatológico (capítulo 2). Por fim todas as famílias de descritores da comunidade estudadas nos capítulos 1 e 2 foram integralizadas através do uso de índices de integridade biológica (capítulo 3). A análise da ictiofauna como bioindicadora mostrou que, para os dois ambientes (canal e igarapé), considerando as várias famílias de descritores, foi evidente a composição diferenciada entre os locais. Das 77 espécies capturadas, apenas 23 foram encontradas na zona 1. Adicionalmente, também foi observada a diminuição de organismos de grande porte. Este decréscimo foi considerado como uma resposta ecológica inicial as alterações antrópicas. A análise dos biomarcadores, feito através do estudo histopatológico do fígado se mostrou eficiente e demonstrou que presença antrópica naquela região está afetando a saúde da P. squamosissimus e L. dorsalis. O MAV (Mean Assessment Values), HAI (Histological Alteration Index) e o MDS (multidimensional scaling) mostraram claramente as diferenças entre as áreas estudadas. Nas áreas em que existe o contato mais próximo com o porto e as indústrias, as alterações foram mais severas e algumas consideradas irreversíveis para as duas espécies. As principais lesões encontradas nas duas espécies foram: o aumento do centro melanomacrófagos, degeneração gordurosa, inflamação nos hepatócitos, hepatite, congestão nos vasos e necrose focal. As alterações hepáticas observadas neste estudo foram mais intensas em P. squamosissimus que é carnívora e se alimenta na área de estudo predominantemente de camarão. Através dos índices de integridade todas as informações sobre a comunidade descritas anteriormente foram agregadas e denominadas de métricas. Para os dois ambientes (canal e igarapé), a curva de biomassa/dominância ABC mostrou que as zonas 1 e 2 apresentaram alterações, sendo estas áreas classificadas como moderadamente impactadas. Os índices BHI (Estuarine biological health index), EFCI (Estuarine fish community índex), TFCI (Transitional fish classification índex) e EBI (Estuarine biotic integrity index) foram considerados excelentes indicadores de integridade nas áreas de estudos e foram eficientes em mostrar alterações graves da comunidade de peixes na zona 1. Quanto à zona 2, já foi possível observar algum tipo de alteração no ambiente, mostrando que a contaminação não está se restringindo apenas ao entorno de Vila do Conde. As metodologias aplicadas foram capazes de detectar as interferências antrópicas na área de estudo e podem para ser replicadas em outros ambientes estuarinos. Entretanto, estudos mais detalhados e por um maior período de tempo ainda são necessários em Vila do Conde, principalmente relacionadas à bioacumulação de metais pesados nas principais espécies consumidas.

Biochemical and genotoxic effects of a commercial formulation of the herbicide tebuthiuron in Oreochromis niloticus of different sizes

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

The Vaquita: Can It Survive?

The vaquita (Spanish for "little cow"), or Gulf of California harbor porpoise (Phocoena sinus), has the most limited range of any marine cetacean and is probably the rarest. It has been caught incidentally in gill nets set commercially for totoaba (Totoaba macdonaldi), large fish that were over-exploited in the upper Gulf of California until they, too, were endangered. In 1975. the Mexican Government announced a total indefinite closure on fishing for totoaba, Between the time this porpoise was described as new to science (1958) and its listing by the U.S. Fish and Wildlife Service as Endangered (early 1985), the vaquita was known from only 26 confirmed records (partial remains found on beaches) and a few sightings of live animals. (Note: the vernacular name "cochito" was cited when this animal was listed, but biologists have since learned that "vaquita" is the term used by most local fishermen.) The Endangered Species Technical Bulletin story about its listing (see BULLETIN Vol. X No. 2) said the species was on the brink of extinction "if it still exists."

The Impact of Whaling on the Ocean Carbon Cycle: Why Bigger Was Better

Background: Humans have reduced the abundance of many large marine vertebrates, including whales, large fish, and sharks, to only a small percentage of their pre-exploitation levels. Industrial fishing and whaling also tended to preferentially harvest the largest species and largest individuals within a population. We consider the consequences of removing these animals on the ocean's ability to store carbon. Methodology/Principal Findings: Because body size is critical to our arguments, our analysis focuses on populations of baleen whales. Using reconstructions of pre-whaling and modern abundances, we consider the impact of whaling on the amount of carbon stored in living whales and on the amount of carbon exported to the deep sea by sinking whale carcasses. Populations of large baleen whales now store 9.1 x 10(6) tons less carbon than before whaling. Some of the lost storage has been offset by increases in smaller competitors; however, due to the relative metabolic efficiency of larger organisms, a shift toward smaller animals could decrease the total community biomass by 30% or more. Because of their large size and few predators, whales and other large marine vertebrates can efficiently export carbon from the surface waters to the deep sea. We estimate that rebuilding whale populations would remove 1.6 x 10(5) tons of carbon each year through sinking whale carcasses. Conclusions/Significance: Even though fish and whales are only a small portion of the ocean's overall biomass, fishing and whaling have altered the ocean's ability to store and sequester carbon. Although these changes are small relative to the total ocean carbon sink, rebuilding populations of fish and whales would be comparable to other carbon management schemes, including ocean iron fertilization.

Groundfish survey data from the German Bight from 1902-08, 1919-23, and 1930-1932 and ICES International Bottom Trawl Survey (IBTS) quarter 3 data from 1991 to 2009

Groundfish survey data from the German Bight from 1902-08, 1919-23, and 1930-1932 and ICES International Bottom Trawl Survey (IBTS) quarter 3 data from 1991 to 2009 were analysed with respect to species frequencies, maximum length, trends in catch-per-unit-effort, species richness parameters (SNR) and presence of large fish (Phi40), the latter defined as average presence of species per haul with specimens larger than 40 cm given. Four different periods are distinguished: (a) before 1914 with medium commercial CPUE and low landings, Phi40 approx. 2, high abundance in elasmobranchs and SNR conditions indicating highly diverse assemblages, (b) conditions immediately after 1918 with higher commercial CPUE, recovering landings, Phi40 at > 4 in 1919, and SNR conditions indicating highly diverse assemblages, (c) conditions from 1920 to the early 1930's with decreasing commercial CPUE, increased landings, decreasing Phi40, SNR conditions similar to later years indicating less diverse assemblages, and a decrease in elasmobranchs. In the IBTS series (d), Phi40 remains low indicating an increased rarity of large specimens, and SNR characteristics are similar to the third period. Dab, whiting and grey gurnard have increased considerably in the IBTS series as compared to the historic data. Phi40 is suggested an alternative indicator reflecting community functional diversity when weight based indicators cannot be applied.

Competitividade da cadeia produtiva do Arapaima gigas, o pirarucu da Amazônia brasileira

Com um quinto da água doce do planeta, o sistema fluvial da Amazônia apresenta um enorme potencial para piscicultura. De acordo com a FAO, em função das suas condições geográficas, o Brasil é um dos poucos países que tem condições de atender à crescente demanda mundial, podendo tornar-se um dos maiores produtores de peixes do mundo. A observação desse potencial amazônico motivou o desenvolvimento desta pesquisa que se debruça sobre a questão da competitividade da cadeia produtiva de Arapaima gigas, o pirarucu da Amazônia brasileira. As pesquisas de campo levaram ao mapeamento de duas cadeias: a cadeia extrativista e a piscicultura. A abordagem sistêmica permitiu a verificação das características dos atores e as bases sob as quais as transações se estabelecem. À luz da teoria das restrições foram identificados os gargalos que impedem a competitividade do sistema, inclusive alertando para os recursos com restrição de capacidade. Comprovou-se que a falta de uma cadeia produtiva devidamente organizada pode provocar graves prejuízos a determinados elos, enquanto outros membros aproveitam-se de ações oportunistas para ampliar suas margens de lucro. Da mesma forma, a ausência de uma cadeia produtiva completa impede a fixação do valor gerado na região de origem das matérias-primas. No entanto, também foi possível comprovar que há possibilidade de desenvolver o extrativismo atribuindo valor econômico aos recursos naturais e gerando renda para a comunidade local. Além de apresentar o panorama do setor na região delimitada, este estudo culminou em reflexões capazes de orientar políticas públicas para o desenvolvimento de cadeias produtivas completas na região da Amazônia brasileira.

Anaemia and vitamin A deficiency in poor urban pregnant women of Bangladesh

This cross-sectional study investigated the prevalence of anaemia and vitamin A deficiency (VAD) among pregnant women in a poor urban population of Bangladesh. It also examined the association of various socio-economic and dietary factors with anaemia and vitamin A status. A maternal and child health clinic in Dhaka city, Bangladesh was used to obtain the sample. Three hundred and eighty three pregnant women, aged 20-30 years, of 20-30 weeks gestation were randomly selected from women on their first presentation for antenatal care. Socio-economic, pregnancy related information, usual dietary pattern, and anthropometric data were collected. Blood haemoglobin and serum retinol (vitamin A) concentrations were determined. About 40% of the pregnant women were anaemic (haemoglobin <11.0 g/dl) and 45% had low serum vitamin A levels (<30 mug/dl); with 8.6% having sub-clinical VAD (serum retinol <20 μg/dl). The women with low serum vitamin A levels had 1.8 times greater risk of being anaemic than did the women with normal vitamin A status. Food frequency data revealed that a large proportion of these women did not consume egg (49%), milk (25%), meat (31%), liver (83%), large fish (32%), small fish (39%) and sweet pumpkin (52%) at all; while about 25% of the women reported consuming dark green leafy vegetables (DGLV) and 64% reported an intake of fruit at least four servings a week. The pregnant women who were either illiterate or received only informal education (up to grade ten) had significantly lower haemoglobin and serum vitamin A levels compared to those who completed at least a secondary school certificate. The women whose husbands were illiterate or received only informal education had significantly (P=0.01) lower serum vitamin A levels than those whose husbands had received at least a secondary school certificate. The women who came from families with a per-capita income below the poverty line had significantly lower haemoglobin and serum vitamin A levels compared to those who came from families with a per-capita income above the poverty line. The women who consumed three servings or less of DGLV and fruit per week had significantly lower haemoglobin and serum vitamin A levels than those who consumed four or more servings a week. The women who never consumed large fish had significantly lower haemoglobin compared to those who reported at least one serving a week. Furthermore, the women who never consumed sweet pumpkin had significantly lower serum vitamin A than the women who ate at least one serving a week. By multiple regression analysis, intake of meat, DGLV and fruit, and serum vitamin A levels were found to have a significant independent relationship with haemoglobin. The overall F-ratio (9.9) was highly significant (P=0.000), the adjusted R-square was 0.086 (multiple R=0.309). Multiple regression analysis for serum vitamin A also revealed a significant independent relationship with per capita income, haemoglobin levels, intakes of DGLV and sweet pumpkin. The overall F-ratio (10.2) was highly significant (P=0.000), the adjusted R-square was 0.10 (multiple R=0.312). In conclusion, anaemia and vitamin A deficiency were highly prevalent among poor urban pregnant women in Bangladesh. Various socio-economic and dietary factors may influence the anaemia and vitamin A status of these women. The present study emphasizes the need for a comprehensive intervention strategy, which include both nutritional and environmental factors, to improve the nutritional status of this population.

Assessing the net effect of anthropogenic disturbance on aquatic communities in wetlands: community structure relative to distance from canals

Anthropogenic alterations of natural hydrology are common in wetlands and often increase water permanence, converting ephemeral habitats into permanent ones. Since aquatic organisms segregate strongly along hydroperiod gradients, added water permanence caused by canals can dramatically change the structure of aquatic communities. We examined the impact of canals on the abundance and structure of wetland communities in South Florida, USA. We sampled fishes and macroinvertebrates from marsh transects originating at canals in the central and southern Everglades. Density of all aquatic organisms sampled increased in the immediate proximity of canals, but was accompanied by few compositional changes based on analysis of relative abundance. Large fish (>8 cm), small fish (<8 >cm) and macroinvertebrates (>5 mm) increased in density within 5 m of canals. This pattern was most pronounced in the dry season, suggesting that canals may serve as dry-down refugia. Increases in aquatic animal density closely matched gradients of phosphorus enrichment that decreased with distance from canals. Thus, the most apparent impact of canals on adjacent marsh communities was as conduits for nutrients that stimulated local productivity; any impact of their role as sources of increased sources of predators was not apparent. The effect of predation close to canals was overcompensated by increased secondary productivity and/or immigration toward areas adjacent to canals in the dry season. Alternatively, the consumptive effect of predatory fishes using canals as dry-season refuges is very small or spread over the expanse of marshes with open access to canals.