Differences in the rDNA-bearing chromosome divide the Asian-Pacific and Atlantic species of Crassostrea (Bivalvia, Mollusca)

Karyotype and chromosomal location of the major ribosomal RNA genes (rDNA) were studied using fluorescence in situ hybridization (FISH) in five species of Crassostrea: three Asian-Pacific species (C. gigas, C. plicatula, and C. ariakensis) and two Atlantic species (C. virginica and C. rhizophorae). FISH probes were made by PCR amplification of the intergenic transcribed spacer between the 18S and 5.8S rRNA genes, and labeled with digoxigenin-11-dUTP. All five species had a haploid number of 10 chromosomes. The Atlantic species had 1-2 submetacentric chromosomes, while the three Pacific species had none. FISH with metaphase chromosomes detected a single telomeric locus for rDNA in all five species without any variation. In all three Pacific species, rDNA was located on the long arm of Chromosome 10 (10q)-the smallest chromosome. In the two Atlantic species, rDNA was located on the short arm of Chromosome 2 (2p)-the second longest chromosome. A review of other studies reveals the same distribution of NOR sites (putative rDNA loci) in three other species: on 10q in C. sikamea and C. angulata from the Pacific Ocean and on 2p in C. gasar from the western Atlantic. All data support the conclusion that differences in size and shape of the rDNA-bearing chromosome represent a major divide between Asian-Pacific and Atlantic species of Crassostrea. This finding suggests that chromosomal divergence can occur under seemingly conserved karyotypes and may play a role in reproductive isolation and speciation.

Comparison of two marine sponge-associated Penicillium strains DQ25 and SC10: differences in secondary metabolites and their bioactivities

Two strains of Penicillium, DQ25 and SC10, isolated from marine sponge Haliclona angulata (Bowerbank) and Hymeniacidon sp. respectively, were subjected to stationary cultivation under GYP medium for 30 days. The fermentation extracts were undergone bioactivities assays against human pathogens, phytopathogenic fungi and brine shrimp (Artemia salina). Bioassays-guided compounds isolation was performed by Silica gel columns and Sephadex LH-20 chromatography. Spectroscopic methods were used to structures elucidation of the compounds. Results showed the activities of secondary metabolites of strain DQ25 were generally stronger than that of strain SC10. Major bioactive molecules isolated from strain DQ25 were a 1,4-naphthoquinone derivative and an unidentified alkaloid. The two components were not isolated from the extract of strain SC10. ITS sequences revealed that these two species have the greatest similarity with Penicillium vinaceum and Penicillium granulatum respectively.

软体动物线粒体基因组学及分子系统发生研究

本研究以双壳纲、翼形亚纲、珍珠贝目、扇贝超科的栉孔扇贝(Chlamys farreri )、海湾扇贝(Argopecten irradians)和牡蛎超科巨蛎属(Crassostrea)的长牡蛎(C. gigas)、葡萄牙牡蛎(C. angulata)、熊本牡蛎(C. sikamea)、香港巨牡蛎(C. hongkongensis)和近江牡蛎(C. ariakensis)5种牡蛎及异齿亚纲、帘蛤目、帘蛤科的紫斑文蛤(Meretrix pethechialis)为研究对象，系统的研究了以上物种的线粒体基因组全序列的特点。并以线粒体12个蛋白质编码基因的序列，在氨基酸和核苷酸水平上构建了软体动物的分子系统发生树。本研究旨在为利用线粒体基因组全序列全面构建软体动物分子系统发生树，为软体动物的系统发生和进化研究提供一种新的思路和前期基础工作，本研究主要内容分为以下三个部分： 一、栉孔扇贝和海湾扇贝线粒体基因组序列分析及分子系统发生研究 采用Long-PCR技术扩增了栉孔扇贝和海湾扇贝线粒体全基因组，利用步移法结合文库构建的测序策略获得了线粒体基因组的序列。海湾扇贝线粒体全基因组长度为16,211 bp，栉孔扇贝接近全序列长度为20,789 bp。两个基因组都编码35个基因，包括12个蛋白质编码基因，2个rRNA和21个tRNA。与典型的动物线粒体基因组相比，两个基因组都缺少一个蛋白质编码基因atp8和2个trnS, 在海湾扇贝基因组中有1个trnF的重复，而在栉孔扇贝基因组中有1个trnM的重复。基因排列比较显示，尽管海湾扇贝、栉孔扇贝和巨扇贝分类学上属于同一扇贝科，但是它们的线粒体基因排列非常不同。在四种扇贝中，虾夷扇贝与栉孔扇贝的基因排列顺序非常相似；即使排除tRNA的比较，栉孔扇贝和海湾扇贝基因组仅仅共享三个小的基因块；而海湾扇贝与巨扇贝仅有一个相同的基因块。在所有的系统发生分析中，四种扇贝稳定的系统发生关系得到强有力的支持，海湾扇贝较其他三种扇贝较早的分化出来；栉孔扇贝比其他两种扇贝与虾夷扇贝亲缘关系更近。贝叶斯法和最大似然法分析都支持扇贝超科的单系发生。 二、巨蛎属牡蛎线粒体基因组全序列分析及分子系统发生研究 采用Long-PCR扩增技术和步移法结合文库构建的技术策略获得了巨蛎属C. gigas、C. angulata、C. sikamea、C. hongkongensis和C. ariakensis 5种牡蛎线粒体全基因组序列，并于GenBank已公布的美洲牡蛎C.virginica序列进行比较研究。C. gigas、C. angulata、C. sikamea、C. hongkongensis和C. ariakensis线粒体全基因组长度分别为18,225 bp、18,225 bp、18,243 bp、18,622 bp和18,414 bp，都长于C. virginica基因组17,244 bp的长度。本研究的5种牡蛎线粒体基因组都编码39个基因，包括12个蛋白质编码基因，2个rRNA和25个tRNA。与典型的线粒体基因组相比，都缺少一个蛋白质编码基因atp8，有trnM、trnK和trnQ 3个tRNA基因的重复，更特别的是基因组中的rrnL分为两段，这在其它线粒体基因组中未见报道，有一个重复的rrnS；而C. virginica基因组编码37个基因，与其他牡蛎相比，没有trnK和trnQ重复，只有一个rrnS。基因排列比较显示，巨蛎属的5种牡蛎C. gigas、C. angulata、C. sikamea、C. hongkongensis和C. ariakensis基因排列完全一致，而与C. virginica的基因排列相比仍然有较大的差别，有多个tRNA发生易位。系统发生分析显示，C. gigas和C. angulata首先聚在一起，然后与C. sikamea聚为一支。C. hongkongensis和C. ariakensis聚成一支。C. virginica为单独的一支。系统树清楚的显示出C. gigas和C. angulata以及C. hongkongensis和C. ariakensis非常近的亲缘关系，这也是长期以来，牡蛎分类学上的经典问题，有学者认为C. gigas和C. angulata为同一物种，线粒体基因组的数据显示C. gigas和C. angulata可能达到不同物种的差异。传统分类上的“近江牡蛎”的“白蚝”和“赤蚝”，线粒体序列差别明显，完全支持两种牡蛎新种名的制定。 三、紫斑文蛤线粒体基因组全序列分析及分子系统发生研究 采用Long-PCR扩增技术和步移法结合文库构建的技术策略获得了紫斑文蛤线粒体基因组全序列。该基因组全长19,567 bp，编码36个基因，包括12个蛋白质编码基因，2个rRNA和22个tRNA。与典型的线粒体基因组相比，缺少一个蛋白质编码基因atp8和1个trnS, 有1个trnQ基因的重复。基因排列比较显示，双壳类的基因排列在低的分类阶元时相对保守。在帘蛤科中，紫斑文蛤M. petechialis和菲律宾蛤仔V. philippinarum共享四个完全一致的基因块，两个大的基因块是cox1-L1-nad1-nad2-nad4L-I 和 cox2-P-cob-rrnL-nad4-H-E-S2-atp6-nad3-nad5，另两个小基因块只包括tRNA基因。在以氨基酸序列构建的分子系统树中，帘蛤科紫斑文蛤与菲律宾蛤仔首先聚在一起，然后，它们与A. tuberculata形成一个进化枝。这一枝与H. arctica结合起来，支持异齿亚纲单系发生。

Identification of Crassostrea ariakensis and related oysters by multiplex species-specific PCR

Genetic markers are needed for rapid and reliable identification of oysters. In this study, we developed multiplex genus- and species-specific PCR markers for the identification of oysters from China. We used the mitochondrial cytochrome oxidase I (COI) and nuclear 28S ribosomal RNA genes for marker development. DNA sequences from different species were obtained from GenBank or by direct sequencing. Sequences were aligned, and genus- and species-specific nucleotides were identified. Primers were designed for genus/species-specific amplification to generate fragments of different sizes. A multiplex set of genus- and species-specific primers from the 28S gene was able to separate C. ariakensis and C. hongkongensis from other species and assign oysters to four genera. A set of species-specific COI primers provided positive identification of all five Crassostrea species from China, C. ariakensis, C. hongkongensis, C. angulata, C. gigas, and C. sikamea in a single PCR. The multiplex PCR assays do not require fluorescence-labeling or post-PCR enzyme digestion, providing a simple, fast and reliable method for the identification of oysters from China.

Its length polymorphism in oysters and its use in species identification

In an effort to develop genetic markers for oyster identification, we studied length polymorphism in internal transcribed spacers (ITS) between major ribosomal RNA genes in 12 common species of Ostreidae: Crassostrea virginica, C. rhizophorae, C. gigas, C. angulata, C. sikamea, C. ariakensis, C. hongkongensis, Saccostrea echinata, S. glomerata, Ostrea angasi, O. edulis, and O. conchaphila. We designed two pairs of primers and optimized PCR conditions for simultaneous amplification of ITS 1 and ITS2 in a single PCR. Amplification was successful in all 12 species, and PCR products were visualized on high-resolution agarose gels. ITS2 was longer than ITS 1 in all Crassostrea and Saccostrea species, whereas they were about the same size in the three Ostrea species. No intraspecific variation in ITS length was detected. Among species, the length of ITS I and ITS2 was polymorphic and provided unique identification of 8 species or species pairs: C. ariakensis, C. hongkongensis, C. sikamea, O. conchaphila, C. virginica/C. rhizophorae, C. gigas/C. angulata, S. echinata/S. glonzerata, and O. angasi/O. edulis. The ITS assay provides simple, rapid and effective identification of C. ariakensis and several other oyster species. Because the primer sequences are conserved, the ITS assay may be useful in the identification of other bivalve species.

Embryology of Crawfurdia delavayi (Gentianaceae) and its systematic value

The embryological characters of Crawfurdia delavayi Frabnch. are described and the systematic relationships of Crawfurdia discussed. Anthers are tetrasporangiate. The development of anther walls conforms to the Dicotyledonous type. The tapetum is of single origin. The development of the tapetum with uninucleate cells is of the glandular type. The tapetal cells on the connective side show radial elongation or periclinal division and intrude into the anther locule. The epidermis of anther walls persists and its cells become pillar and fibrous, and the endothecium degenerates. The ovary is bicarpellary and unilocular. The placentation is typically parietal with 8 rows of anatropous ovules. The development of embryo sac is of the polygonum type. Before fertilization, two polar nuclei fuse into a secondary nucleus. Three antipodal cells persist. Flowers are protandrous. Fertilization is porogamous. The development of the endosperm is of the nuclear type. The embryogeny corresponds to the solanad type physalis II variation. The embryological data indicate that it is better to separate Crawfurdia from Gentiana as an independent genus.

Círculo de hospedeiras de isolados de Verticillium dahliae obtidos de tomteiro, quiabeiro e morangueiro.

O gênero Verticillium apresenta duas importantes espécies de fitopatógenos (V. dahliae e V. albo-atrum). A capacidade de produção de microescleródios dos isolados de V. dahliae em cultura tem sido empregada como a principal característica para distinção destas duas espécies. Verticillium dahliae é um fungo bastante polífago, amplamente disseminado no território brasileiro, causando murcha vascular em tomate, berinjela, jiló, algodão, morango, cacau, quiabo, dentre outras hospedeiras. Verticillium dahliae apresenta especialização fisiológica em tomateiro tendo sido descritas duas raças. O presente trabalho teve por objetivo investigar a capacidade de isolados de V. dahliae em infectar e causar doença em plantas de diversas famílias botânicas. Para avaliação da gama de hospedeiros, quatro isolados do fungo foram inoculados em 62 acessos de 54 espécies em 40 gêneros e 18 famílias botânicas. A maioria dos acessos mostrou-se susceptível ao patógeno. Foram classificadas como plantas não-hospedeiras todas as gramíneas avaliadas, as solanáceas Datura stramonium, Nicandra physaloides e Physalis ?oridana, couve-flor (linhagem CNPH-003), melancia (cv. Crimson Sweet), melão (cv. Eldorado 300) alface (cvs. Regina e Robinson), cenoura, feijão, soja-verde, beterraba, maracujá azedo (Passi?ora edulis), capuchinha (Trapaeolum majus) e cariru (Talinum triangulare). Foram identificadas 27 novas hospedeiras experimentais de V. dahliae.

Produção integrada em tanques de terra: "estudo comparativo da produção integrada de cinco espécies de Sparideos em sistema de policultivo simples e em sistema integrado com ostras e holotúrias" e "abordagem teórica de um estudo económico para IMTA"

O presente trabalho teve como objetivo avaliar a produção de peixes em dois diferentes sistemas de cultivo, policultivo e aquacultura multi-trófica integrada, tomando como referência o crescimento das espécies, o estudo patológico das brânquias e análise de conteúdo estomacal das espécies envolvidas no ensaio (Sparus aurata, Diplodus cervinus, D. puntazzo, D. sargus e D. vulgaris), e por fim foi feita uma abordagem teórica para identificar os custos envolvidos no sistema. Para realização do ensaio foram usados seis tanques, sendo dois tratamentos, em regime triplicado. Os resultados indicam uma boa adaptação dos peixes em ambos os sistemas. A biomassa inicial foi de 0,12 Kg.mˉ3, sendo formada por: 12% Sparus aurata (119,5g), 33% Diplodus puntazzo (134,7g), 45% D. sargus (90,3g), 3% D. cervinus (37,6g) e 7% D. vulgaris (93,1g) e em três tanques também com 42 Kg de Holoturia tubulosa, pepinos do mar, e 75 Kg de Crassostrea angulata, ostras. D. cervinus, D. vulgaris e D. sargus apresentaram baixa taxa de crescimento, ≤ 0,7g/dia, ambas as espécies, e Diplodus cervinus apresentou baixa taxa de sobrevivência em ambos os sistemas (57,8% poli cultivo e 73,3% IMTA). Diplodus puntazzo foi a espécie que melhor se adaptou ao sistema de policultivo simples. Sparus aurata foi a espécie que apresentou melhor taxa de crescimento e melhor taxa de sobrevivência nos dois sistemas. Os conteúdos alimentares apresentaram semelhança entre Diplodus cervinus, D. vulgaris e Sparus aurata, semelhantes também foram os itens alimentares identificados em D. sargus e D. puntazzo, entretanto a preferência alimentar das últimas espécies citadas são opostas as das três primeiras. S. aurata e D. puntazzo que apresentaram maior peso médio foram preferencialmente infestadas por Lamellodiscus spp.. Nas espécies com pesos médios inferiores, como D. cervinus, D. sargus e D. vulgaris foram maiores as infestações por Microcotyle spp.

Development and standardization of a protocol for sperm cryopreservation of two important commercial oyster species

Dissertação de mestrado, Aquacultura e Pescas, Faculdade de Ciências e Tecnologia, Universidade do Algarve, 2015

Plan de exportación de uchuva a Japón: viabilidad y estrategias aplicables

Dado el posicionamiento de nuestro país en producción de Uchuva a nivel mundial y, gracias a la calidad con la que se obtiene el producto, se ha encontrado una oportunidad de negocio que permita incrementar las exportaciones, expandir el mercado y aumentar el reconocimiento del producto, trayendo consigo beneficios y ganancias para el país y sus productores. Lo que se busca con éste proyecto es proponer un plan de exportaciones viable y exitoso, evaluando factores técnicos y económicos que permitan el desarrollo del mismo. Sin embargo, a pesar de ser la Uchuva importante dentro de la producción agrícola en el país, ésta no es explotada como debería. El mercado internacional es bastante amplio, y dado que la fruta es exótica y llamativa por sus propiedades, hace que sea de interés para el mundo, generando que el mercado pueda expandirse, incrementando así las exportaciones. Es por esto que se ha propuesto otorgar lineamientos para que dichas exportaciones sean viables y traigan consigo los mejores beneficios y ganancias para los productores de la fruta. Además, se quieren implementar estrategias que generen exportaciones exitosas, que permitan al sector agrícola incrementar su producción, al igual que, aumentar el desarrollo del sector, generando un incremento económico y un aumento de empleos, dos factores que traen consigo el desarrollo, no solo de la gente que trabaja el producto, sino del país en general. Todo esto, enfocado hacia un país con baja producción agrícola y alto nivel de importaciones como Japón, país con características imponentes para implementar un plan de exportación de una fruta fresca, exótica, de excelente calidad y reconocimiento, como lo es la Uchuva colombiana.

Withanolides from Aureliana fasciculata var. fasciculata

In the first phytochemical study of the Aureliana genus (Solanaceae), two new withanolides, 1 and 2, together with two known sterols, were isolated from the MeOH extract of the leaves of Aureliana fasciculata var. fasciculata. The structures were established as (4S,22R)-16 alpha-acetoxy-5 beta,6 beta-epoxy-4 beta,17 alpha-dihydroxy-1-oxowitha-2,24-dienolide (aurelianolide A) and (4S,22R)-16 alpha-acetoxy-4 beta,17 alpha-dihydroxy-1-oxowitha-2,5,24-trienolide (aurelianolide B). The new compounds possessed the unusual 16 alpha,17 alpha-dioxygenated group and were fully characterized by spectroscopic techniques, including (1)H- and (13)C-NMR (DEPT), as well as 2D-NMR (HMBC, HMQC, (1)H, (1)H-COSY, NOESY) experiments, and HR-MS.

Flora Polínica da Reserva do Parque Estadual das Fontes do Ipiranga (São Paulo, Brasil): Família: 136-Solanaceae

Foram estudados os grãos de pólen de 12 gêneros e 41 espécies de Solanaceae ocorrentes na Reserva do Parque Estadual das Fontes do Ipiranga: Acnistus arborescens (L.) Schlecht., Athenaea picta (Mart.) Sendtn., Brunfelsia latifolia Benth., Brunfelsia pauciflora (Cham. & Schlecht.) Benth., Capsicum flexuosum (L.) Sendtn., Capsicum villosum (L.) Sendtn., Cestrum amictum (L.) Schlecht., Cestrum corymbosum (L.) Schlecht., Cestrum lanceolatum (L.) Miers, Cestrum schlechtendalii (L.) G. Don, Cestrum sendtnerianum (L.) Mart. ex Sendtn., Cyphomandra diploconos Sendtn., Cyphomandra velutina Sendtn., Dyssochroma viridiflora (Sims) Ducke, Nicotiana langsdorffii (Weinm.) Roem. & Schult., Physalis peruviana L., Physalis viscosa L., Sessea brasiliensis Tol., Solandra grandiflora Sw, Solanum americanum Mill., Solanum atropurpureum Schrank., Solanum bullatum Vell., Solanum capsicoides Allion., Solanum cernuum Vell., Solanum concinnum Schott ex Sendtn., Solanum didynum Dun., Solanum diflorum Vell., Solanum excelsum St. Hil. ex Dun., Solanum granuloso-leprosum Dun., Solanum hoehnei Morton, Solanum inaequale Vell., Solanum inodornum Vell., Solanum lycocarpum St. Hil. ex Dun., Solanum mauritianum Scop., Solanum paniculatum L., Solanum rufescens Sendtn., Solanum sisymbriifolium Lam., Solanum swartzianum Roem. & Schult., Solanum vaillantii Dun., Solanum variabile Mart., Solanum viarum Dun. São apresentadas descrições para todas as espécies estudadas, ilustrações, observações e seis chaves polínicas.

A report of 49 cases of cnidarian envenoming from southeastern Brazilian coastal waters

Forty-nine accidents caused by jellyfish (Cnidaria) were observed during a period of 5 years on the southeastern coast of Brazil. Most of them involved male patients (65.3%), the injured areas being mainly the legs (71.3%) and the trunk (65.3%). Twenty accidents with Chiropsalmus quadrumanus, four with Physalia physalis and 20 with unidentified jellyfish presented intense pain, linear plaques and systemic symptoms. The five cases with Olindias sambaquiensis caused mild pain, round plaques and no systemic symptoms. There are a few reports on accidents caused by jellyfish, in this country, and scarce clinical or epidemiological data are available up to the present moment. (C) 2002 Elsevier B.V. Ltd. All rights reserved.

Skin lesions in envenoming by cnidarians (Portuguese man-of-war and jellyfish): etiology and severity of accidents on the Brazilian coast

This work attempts to establish dermatological identification patterns for Brazilian enidarian species and it probable correlation with envenoming, severity In all observational prospective study, one hundred and twenty-eight patients from the North Coast re-ion of São Paulo State, Brazil were seen between 2002 and 2008. About 80% of these Showed only local effects (erythema, edema, and pain) with small, less than 20 cm, oval or round skin marks and impressions from Small tentacles. Approximately 20% of the victims had long, more than 20 cm, linear and crossed marks with frequent systemic phenomena, such as malaise, vomiting, dyspnea, and tachycardia. The former is compatible with the common hydromedusa from Southeast and Southern Brazil (Olindias sambaquiensis). The long linear marks with intense pain and systemic phenomena are compatible with envenoming, by the box jellyfish Tamoya haplonema and Chiropsalmus quadrumanus and the hydrozoan Portuguese man-of-war (Physalis physalis). There was an association between Skin marks and probable accident etiology. This simple observation rule can be indicative of severity as the Cubozoa Class (box jellyfish) and Portuguese man-of-war cause the most severe accidents. In such cases, medical attention, including intensive care, is important, as the systemic manifestations call be associated with death.

Ecological aspects of helminth fauna of Magellanic penguins, Spheniscus magellanicus (aves: Spheniscidae), from the Northern Coast of the State of São Paulo, Brazil

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)