Genetic diversity and taxonomic implication of Cordyceps sinensis as revealed by RAPD markers

Random amplified polymorphic DNA (RAPD) markers are used to investigate genetic variation and evolutionary relationships of 29 samples of Cordyceps sinensis from different geographical populations on the Qinghai-Tibet plateau. Out of 137 RAPD bands scored, 100 are polymorphic. A correlation is revealed between geographical distance and genetic distance. The molecular phylogenetic tree suggests that the 29 samples are divided into three notable clusters, corresponding to the geographical populations, i.e., the north population (NP), middle population (MP), and south population (SP). The NP consists of 7 northern samples from Menyuan, Maqu, and Luqu, the MP consists of 8 samples from Yushu and Chengduo, and the SP consists of 14 samples from Byma Snow Mountain, Renzhi Snow Moutain, Chongcaoxiwa, and Dacaodi. It is demonstrated that extensive genetic diversity is found among different geographical populations of C. sinensis. The genetic diversity pattern of C. sinensis may be caused by the founder effects. The taxonomic status of NP, MP, and SP populations should be that they are different subspecies rather than different species.

Taxonomic status of the white-head langur (Trachypithecus francoisi leucoscephalus) inferred from allozyme electrophoresis and random amplified polymorphism DNA (RAPD)

Six sample specimens of Trachypithecus francoisi and 3 of T. leucocephalus were analyzed by use of allozyme electrophoresis and random amplified polymorphism DNA (RAPD) in order to clarify the challenged taxonomic status of the white-head langur. Among the 44 loci surveyed, only 1 locus (PGM-2) was found to be polymorphic. Nei's genetic distance was 0.0025. In total, thirty 10-mer arbitrary primers were used for RAPD analysis, of which 22 generated clear bands. Phylogenetic trees were constructed based on genetic distances using neighbor-joining and UPGMA methods. The results show that T. francoisi and T: leucocephalus are not monophyletic. T. francoisi from Guangxi, China and Vietnam could not be clearly distinguished, and they are not divided into 2 clusters. A t-test was performed to evaluate between genetic distances within and between T. leucocephalus and T. francoisi taxa groups. The statistical test shows that the taxa group within T: leucocephalus and T: francoisi does not significantly differ from that between T: leucocephalus and T: francoisi at the 5% level. Our results suggest that the level of genetic differentiation between T, leucocephalus and T. francoisi is relatively low. Recent gene flow might exist between T. francoisi and T. leucocephalus. Combining morphological features, geographical distribution, allozyme data, RAPD data, and mtDNA sequences, we suggest that the white-head langur might be a subspecies of T. francoisi.

用RAPD技术对特化等级裂腹鱼类亲缘关系的探讨

用RAPD标记技术来分析属级或属级以上分类单元的亲缘关系,具有一定的适用性。对于一些遗传差异较大的类群(如裂腹鱼类),应用属级或属级以上分类单元的亲缘关系,很可能会出现个体之间遗传距离接近或达到100%的情况,从而无法探讨其相互之间的亲缘关系。

RAPD分析野生和养殖太湖秀丽白虾的遗传多样性

<正>秀丽白虾(Exopalaemon modestus)广泛分布于我国淡水湖泊及河流中,南北均产。在太湖的虾类组成中,秀丽白虾占50%以上。近年来,由于水质污染和过度捕捞等原因,太湖秀丽白虾的繁衍、生存受到了很大威胁,白虾种质资源保护及

人工四倍体鲤鲫后代遗传同一性的FCM及RAPD证明

国家自然科学基金项目(30471342)资助

丹江口水库赤眼鳟(Squaliobarbus curriculus)遗传多样性的RAPD和ISSR分析

利用RAPD和ISSR两种分子标记技术,分析了丹江口水库野生赤眼鳟30个个体的遗传多样性。用11个RAPD引物对其基因组DNA进行扩增,共获得101个重复性好且谱带清晰的扩增位点,片段大小在100—3000bp之间,其中多态性位点63个,多态位点比例为62.38%;个体间遗传距离在0.1049—0.3417之间,平均为0.1742。用10个ISSR引物共检测到88个位点,其中多态性位点61个,多态位点比例为69.32%;个体间遗传距离在0.1088—0.3847之间,平均为0.1907。结果显示,丹江口水

不产子实体蛹虫草单孢子分离株的获得及RAPD分析

对优势蛹虫草原始菌株WWM04进行单孢子分离,共获得9个单孢子分离株,采用米饭培养基培养确证并且获得6个完全不产子实体的单孢子分离株。利用随机扩增多态性DNA(RAPD)分子标记方法对菌落差异的4个菌落特征典型的不产子实体单孢子分离株(SSP2、SSP7、SSP19和SSP21)、原始菌株以及由原始菌株12次转接后退化的菌株进行遗传多样性分析。结果表明,引物S37、S61对6个菌株的扩增谱带具有非常明显的特异性,该结果为蛹虫草退化分子标记奠定基础,并且在一定程度上也印证了蛹虫草异核现象和准性生殖理论。

利用RAPD-PCR探讨天蓝喇叭虫生物群系分化

选择天蓝喇叭虫(Stentor coeruleus)作为研究对象,对武汉市南湖、月湖、关桥3个水体共5个样点天蓝喇叭虫(S.coeruleus)样本的总DNA进行随机扩增多态DNA聚类分析,以检测各个样本的遗传相似性和趋异程度,借以评估样本间的遗传变异度。结果如下:(1)从98条随机引物中筛选12条引物共扩增出89条大小为100～1500bp的清晰条带,平均每条引物扩增出7.4条片段。(2)用Rapdistance1.04分析显示,不同样点样本之间存在着一定的变异,其遗传距离在0.076～0.416之间。

黄颡鱼与长须黄颡鱼种间的RAPD标记

国家重点基础研究发展计划项目(2004CB117405)资助

乌龟遗传多样性的RAPD分析

运用RAPD技术对乌龟的遗传多样性进行了分析。用 2 0个随机引物对 2 4个个体的基因组DNA进行了PCR扩增 ,一共扩增出 32 88条DNA片段 ,平均每个个体扩增出 137条带。在检测到的 137个位点中 ,多态位点数为 119个 ,占 86 9% ,标记的分子量在 0 .2kb— 3kb之间。个体间最大的遗传距离为 0 4 6 7,个体间最小的遗传距离为0 16 8。 2 4个个体的平均遗传距离为 0 32 4 +0 0 6 31。表明乌龟的遗传多样性水平较高。采用类平均聚类法(NJTREE)构

青海湖裸鲤繁殖群体遗传多样性的RAPD分析

采用随机扩增多态性DNA(RAPD)方法对青海湖裸鲤的3个洄游繁殖群体-黑马河(HM)、布哈河(BH)及沙柳河(SL)群体各30个个体的DNA多态性进行了分析。用13个引物在三个群体中共检测出85个位点,其中多态性位点68个。青海湖裸鲤群体总的DNA多态位点百分率为80.0%。数据分析结果显示:青海湖裸鲤3个群体总的Nei基因多样性为0.3395,Shannon遗传多样性信息指数为0.4861,存在着较为丰富的遗传多样性。青海湖裸鲤3个群体间平均遗传距离为0.0788,基因分化系数Gst为0.1070,表

以RAPD方法分析岩原鲤分类地位

采用opaopoopq等系列44个随机引物对鲤亚科与亚科的几个种类进行随机扩增多态DNA(RAPD)扩增,通过对电泳结果进行系统分析,得出各种间遗传距离分支图.按节点的遗传距离最大数值0.232可以分出亲缘关系最远的两个群体,即由两种普通鲤为一群体,以及由岩原鲤、倒刺和白甲鱼组成的另一群体.从节点间遗传距离数值叠加计算可以得出岩原鲤与其他各种鱼类亲缘关系,遗传距离由近到远分别是:岩原鲤与倒刺(0.344)<岩原鲤与白甲鱼(0.388)<岩原鲤与普通鲤(0.443),岩原鲤与倒刺的遗传距离最小,这一

应用RAPD技术初步分析无裂栉江珧四种类型的基因组DNA

利用 3个随机引物 (S4 5 3,S4 5 4 ,S4 6 3)对无裂栉江珧 (Atrina pectinata L inaeus)的 4种类型 :青口、黄口、沙螺、棘螺基因组 DNA进行 RAPD分析 ,并对 RAPD的实验条件行了优化研究。10～ 2 0 ng的高纯度 DNA用作模板 ,退火温度为 39℃时 ,RAPD扩增的效率较高 ,扩增的带纹清晰可辨。3个引物中 ,引物 S4 5 3和 S4 6 3获得了清晰的 RAPD扩增结果 ,引物 S4 5 4未获得有效扩增 ,共扩增出 8条清晰的 DNA

中国鮡科鱼类RAPD分析及鰋鮡鱼类单系性的初步研究

国家自然科学重点基金课题 ( 39830 0 5 0 )资助

似鮈属鱼类遗传多样性的RAPD分析及种的划分问题

国家自然科学基金 ( 49832 0 10 )资助