Carbon stocks, tree diversity, and the role of organic certification in different cocoa production systems in Alto Beni, Bolivia

This study compares aboveground and belowground carbon stocks and tree diversity in different cocoa cultivation systems in Bolivia: monoculture, simple agroforestry, and successional agroforestry, as well as fallow as a control. Since diversified, agroforestry-based cultivation systems are often considered important for sustainable development, we also evaluated the links between carbon stocks and tree diversity, as well as the role of organic certification in transitioning from monoculture to agroforestry. Biomass, tree diversity, and soil physiochemical parameters were sampled in 15 plots measuring 48 × 48 m. Semi-structured interviews with 52 cocoa farmers were used to evaluate the role of organic certification and farmers’ organizations (e.g., cocoa cooperatives) in promoting tree diversity. Total carbon stocks in simple agroforestry systems (128.4 ± 20 Mg ha−1) were similar to those on fallow plots (125.2 ± 10 Mg ha−1). Successional agroforestry systems had the highest carbon stocks (143.7 ± 5.3 Mg ha−1). Monocultures stored significantly less carbon than all other systems (86.3 ± 4.0 Mg ha−1, posterior probability P(Diff > 0) of 0.000–0.006). Among shade tree species, Schizolobium amazonicum, Centrolobium ochroxylum, and Anadenanthera sp. accumulated the most biomass. High-value timber species (S. amazonicum, C. ochroxylum, Amburana cearensis, and Swietenia macrophylla) accounted for 22.0 % of shade tree biomass. The Shannon index and tree species richness were highest in successional agroforestry systems. Cocoa plots on certified organic farms displayed significantly higher tree species richness than plots on non-certified farms. Thus, expanding the coverage of organic farmers’ organizations may be an effective strategy for fostering transitions from monoculture to agroforestry systems.

Canopy cover mediates interactions between a specialist caterpillar and seedlings of a neotropical tree

1 Light availability may be crucial for understanding dynamics of plant–herbivore interactions in temperate and tropical forest communities. This is because local light availability can influence both tree seedling tolerance and susceptibility to herbivory – yet how they mediate levels of insect herbivory that vary with the density of host population is virtually unknown. Here we tested predictions of three key, non-mutually exclusive hypotheses of plant–herbivore interactions: the Limiting Resource Model (LRM), the Plant Vigour Hypothesis (PVH), and the Janzen-Connell Mechanism (JCM). 2 In an Amazonian forest, we planted Swietenia macrophylla seedlings (c. 5 months old) into natural canopy gaps and the shaded understorey and simulated the damage patterns of the specialist herbivore moth, Steniscadia poliophaea, by clipping seedling leaves. Over the next 8 months, we monitored seedling performance in terms of growth and survivorship and also quantified herbivory to new young leaves on a seasonal basis. 3 In support of the LRM, severe leaf damage (≥ 50%) was lethal for Swietenia macrophylla seedlings in the understorey, but in gaps only reduced seedling growth. In support of the PVH, gap seedlings suffered greater post-simulated herbivory (up to 100% defoliation) by S. poliophaea caterpillars than their understorey counterparts. 4 Adding a novel dimension to the Janzen–Connell hypothesis, we found that early wet season herbivory of seedlings in gaps increased with conspecific adult density within a 125-m radius; whereas in the understorey only those seedlings within 50 m of a Swietenia tree were attacked by caterpillars. 5 Synthesis. These results suggest lepidopterans that need young leaves for food may forage more widely in forests to find seedlings in light-rich canopy gaps. Moths may achieve this successfully by being first attracted to gaps, and then searching within them for suitable hosts. A conceptual model, integrating conspecific adult tree density with light-driven changes in seedling tolerance/vigour and their susceptibility to herbivory and mortality, is presented. Spatial variation in the light available to tree seedlings often affects their tolerance and vigour, which may have important consequences for leaf-chewing insects and the scale of density-dependent herbivory in forests.

Herbivores limit the population size of big-leaf mahogany trees in an Amazonian forest

The Janzen–Connell hypothesis proposes that specialized herbivores maintain high numbers of tree species in tropical forests by restricting adult recruitment so that host populations remain at low densities. We tested this prediction for the large timber tree species, Swietenia macrophylla, whose seeds and seedlings are preyed upon by small mammals and a host-specific moth caterpillar Steniscadia poliophaea, respectively. At a primary forest site, experimental seed additions to gaps – canopy-disturbed areas that enhance seedling growth into saplings – over three years revealed lower survival and seedling recruitment closer to conspecific trees and in higher basal area neighborhoods, as well as reduced subsequent seedling survival and height growth. When we included these Janzen–Connell effects in a spatially explicit individual-based population model, the caterpillar's impact was critical to limiting Swietenia's adult tree density, with a > 10-fold reduction estimated at 300 years. Our research demonstrates the crucial but oft-ignored linkage between Janzen–Connell effects on offspring and population-level consequences for a long-lived, potentially dominant tree species.

Principales maderas tropicales utilizadas en España: Características, tecnología y aplicaciones

Se describen las características de las principales maderas tropicales con uso en España. La descripción incluye el nombre científico, sinonimias, nombres vulgares, su distribución en el mundo y en España, la descripción del fuste y de las trozas, con sus defectos más característicos, la descripción de la madera, sus características físicas, mecánicas, resistentes y durables. También se incluye sus aspectos tecnológicos, en el sentido de indicar que aspectos deben considerarse a la hora de trabajar estas maderas. Por último se indican los usos más comunes de las distintas maderas, las ventajas e inconvenientes frente a otras maderas Las especies principales que se describen son las siguientes: Algarrobo blanco, Prosopis alba, Grisebach Andiroba, Carapa guianensis, Aubl. Balsamo, Myroxylon balsamun, Harms. Sandwith. Barba jolote, Pithecolobium arboreum (L), Urban. Bubinga, Guibourtia tessmanii Caoba, Swietenia macrophylla, King. Cedro, Cedrela odorata, L. Cenizaro, Pithecellobium saman, (Jacq.) Benth Chinchon, Guarea grandiflora, A. DC. Cocobolo, Dalbergia retusa, Hemsl Cristobal, Platysmicium polystachyum Elondo o tali, Erythrophleum ivorensis Espavé, Anacardium excelsum, Skeels Gonzalo Alves, Astronium graveolens, Jacquin. Guayabillo, Terminalia lucida, Hoff. Guapaque, Dialium guianense, (Aubl.) Sandwith. Guayacán, Guaiacum sanctum, L. Huesito Homalium racemosum, Jacq. Ipe, Tabebuia guayacan, Hemsl. Iroko, Milicia excelsa Sim Jatoba, Hymenaea courbaril L. Machiche, Lonchocarpus castilloi, Standley. Manil, Symphonia globulifera, L. Marupa, Simarouba glauca, DC. Melina, Gmelina arborea, Roxb. Mongoy, Guibourtia ehie J. Léonard Nance, Byrsonima crassifolia (L.), H.B.K. Nazareno, Peltogyne purpurea Nispero, Manilkara zapota, (L.) Van royen. Palo blanco, Cybitax donnell- smith , Seibert. Pino amarillo, Erblichia odorata Piojo, Tapirira guianensis, Aubl. Quaruba, Vochysia guatemalensis, Donnell Smith Quira, Platysmicium pinnatum. Redondo, Magnolia yoroconte, Dandy. Rosul, Dalbergia tucurensis, Donn-Smith. Sande, Brossimiun ssp San juan areno, Ilex ssp. Saqui-saqui, Bombacopsis quinatum, (Jacq.) Dugand Santa maría, Calophyllum brasílíense Camb. Sapelly, Entandrophragma cylindricum Sprague Tamboril, Enterolobium cyclocarpum, Gris Teca, Tectona grandis, L.F.. Ukola, Tieghemella africana Ururucana, Hieronyma alchorneoides, Allem

Genetic resource impacts of habitat loss and degradation; reconciling empirical evidence and predicted theory for neotropical trees

The theoretical impacts of anthropogenic habitat degradation on genetic resources have been well articulated. Here we use a simulation approach to assess the magnitude of expected genetic change, and review 31 studies of 23 neotropical tree species to assess whether empirical case studies conform to theory. Major differences in the sensitivity of measures to detect the genetic health of degraded populations were obvious. Most studies employing genetic diversity (nine out of 13) found no significant consequences, yet most that assessed progeny inbreeding (six out of eight), reproductive output (seven out of 10) and fitness (all six) highlighted significant impacts. These observations are in line with theory, where inbreeding is observed immediately following impact, but genetic diversity is lost slowly over subsequent generations, which for trees may take decades. Studies also highlight the ecological, not just genetic, consequences of habitat degradation that can cause reduced seed set and progeny fitness. Unexpectedly, two studies examining pollen flow using paternity analysis highlight an extensive network of gene flow at smaller spatial scales (less than 10 km). Gene flow can thus mitigate against loss of genetic diversity and assist in long-term population viability, even in degraded landscapes. Unfortunately, the surveyed studies were too few and heterogeneous to examine concepts of population size thresholds and genetic resilience in relation to life history. Future suggested research priorities include undertaking integrated studies on a range of species in the same landscapes; better documentation of the extent and duration of impact; and most importantly, combining neutral marker, pollination dynamics, ecological consequences, and progeny fitness assessment within single studies.

Optimal sampling strategy for estimation of spatial genetic structure in tree populations

Fine-scale spatial genetic structure (SGS) in natural tree populations is largely a result of restricted pollen and seed dispersal. Understanding the link between limitations to dispersal in gene vectors and SGS is of key interest to biologists and the availability of highly variable molecular markers has facilitated fine-scale analysis of populations. However, estimation of SGS may depend strongly on the type of genetic marker and sampling strategy (of both loci and individuals). To explore sampling limits, we created a model population with simulated distributions of dominant and codominant alleles, resulting from natural regeneration with restricted gene flow. SGS estimates from subsamples (simulating collection and analysis with amplified fragment length polymorphism (AFLP) and microsatellite markers) were correlated with the 'real' estimate (from the full model population). For both marker types, sampling ranges were evident, with lower limits below which estimation was poorly correlated and upper limits above which sampling became inefficient. Lower limits (correlation of 0.9) were 100 individuals, 10 loci for microsatellites and 150 individuals, 100 loci for AFLPs. Upper limits were 200 individuals, five loci for microsatellites and 200 individuals, 100 loci for AFLPs. The limits indicated by simulation were compared with data sets from real species. Instances where sampling effort had been either insufficient or inefficient were identified. The model results should form practical boundaries for studies aiming to detect SGS. However, greater sample sizes will be required in cases where SGS is weaker than for our simulated population, for example, in species with effective pollen/seed dispersal mechanisms.

Chloroplast and total genomic diversity in the endemic Costa Rican tree Lonchocarpus costaricensis (J.D. Smith) Pittier (Papilionaceae).

In Mesoamerica, tropical dry forest is a highly threatened habitat, and species endemic to this environment are under extreme pressure. The tree species, Lonchocarpus costaricensis is endemic to the dry northwest of Costa Rica and southwest Nicaragua. It is a locally important species but, as land has been cleared for agriculture, populations have experienced considerable reduction and fragmentation. To assess current levels and distribution of genetic diversity in the species, a combination of chloroplast-specific (cpDNA) and whole genome DNA markers (amplified fragment length polymorphism, AFLP) were used to fingerprint 121 individual trees in 6 populations. Two cpDNA haplotypes were identified, distributed among populations such that populations at the extremes of the distribution showed lowest diversity. A large number (487) of AFLP markers were obtained and indicated that diversity levels were highest in the two coastal populations (Cobano, Matapalo, H = 0.23, 0.28 respectively). Population differentiation was low overall, F-ST = 0.12, although Matapalo was strongly differentiated from all other populations (F-ST = 0.16-0.22), apart from Cobano (F., = 0.11). Spatial genetic structure was present in both datasets at different scales: cpDNA was structured at a range-wide distribution scale, whilst AFLP data revealed genetic neighbourhoods on a population scale. In general, the habitat degradation of recent times appears not to have yet impacted diversity levels in mature populations. However, although no data on seed or saplings were collected, it seems likely that reproductive mechanisms in the species will have been affected by land clearance. It is recommended that efforts should be made to conserve the extant genetic resource base and further research undertaken to investigate diversity levels in the progeny generation.

Regional and population-scale influences on genetic diversity partitioning within costa rican populations of the pioneer tree Vochysia ferruginea mart.

The neotropical pioneer species Vochysia ferruginea is locally important for timber and is being increasingly exploited. The sustainable utilisation of this species would benefit from an understanding of the level and partitioning of genetic diversity within remnant and secondary regrowth populations. We used data from total genome (amplified fragment length polymorphism, AFLP) and chloroplast genome markers to assay diversity levels within seven Costa Rican populations. Significant chloroplast differentiation between Atlantic and Pacific watersheds was observed, suggesting divergent historical origins for these populations. Contemporary gene flow, though extensive, is geographically constrained and a clear pattern of isolation by distance was detectable when an inter-population distance representing gene flow around the central Costa Rican mountain range was used. Overall population differentiation was low (F-ST = 0.15) and within-population diversity high, though variable (H-s=0.16-0.32), which fits with the overall pattern of population genetic structure expected for a widespread, outcrossed tropical tree. However genetic diversity was significantly lower and differentiation higher for recently colonised and disturbed populations compared to that at more established sites. Such a pattern seems indicative of a pioneer species undergoing repeated cycles of colonisation and succession.

Estudo da homogeneidade e discriminação de madeiras através de espectroscopia de imagens, imagens digitais e ferramentas quimiométricas

Tese (doutorado)–Universidade de Brasília, Instituto de Química, Programa de Pós-Graduação em Química, 2016.

Restauração de florestas exploradas seletivamente no Acre.

Por meio de técnicas de restauração, florestas exauridas podem ser conduzidas de maneira a minimizar os efeitos da exploração seletiva que as modificaram. O plantio de mudas é um método rápido e eficaz de restauração de florestas. Este trabalho objetiva descrever os resultados de plantios de enriquecimento de florestas de produção nos municípios de Xapuri, Brasiléia e Rio Branco, no estado do Acre. Foram utilizadas dez espécies florestais madeireiras comerciais: amarelão (Aspidosperma vargasii A. DC.), angelim (Ormosia arborea (Vell.) Harms), cedro (Cedrela odorata L.), cerejeira (Amburana acreana (Ducke) A. C. Sm.), freijó (Cordia alliodora (Ruiz & Pav.) Oken), ipê (Tabebuia serratifolia (Vahl) G. Nicholson), itaúba (Mezilaurus itauba (Meisn.) Taub. ex Mez), jatobá (Hymenaea courbaril L.), mogno (Swietenia macrophylla King) e timbaúba (Enterolobium maximum Ducke). Os plantios foram entre outubro/2011 a março/2012, totalizando 1273 mudas. Os tratamentos silviculturais de condução e o monitoramento foram nos anos de 2012, 2013, 2014 e 2015. Após 48 meses ao plantio, a taxa média de sobrevivência foi de 42,3%, altura total média de 1,52 m e diâmetro médio de 1,88 cm. As espécies com os melhores desempenhos com relação a crescimento e sobrevivência foram cerejeira, cedro, freijó, jatobá, mogno e timbaúba.

Xylarenones C-E from an Endophytic Fungus Isolated from Alibertia macrophylla

Xylarenones C-E (2-4), three new eremophilane sesquiterpenes, have been isolated from solid substrate cultures of a Camarops-like endophytic fungus isolated from Alibertia macrophylla. The structures were elucidated by analysis of spectroscopic data. Compounds were evaluated in subtilisin and pepsin protease assays, and compound 2 showed potent inhibitory activity against both proteases.

Dihydroisocoumarins produced by Xylaria sp and Penicillium sp., endophytic fungi associated with Piper aduncum and Alibertia macrophylla

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Xylarenones C-E from an Endophytic Fungus Isolated from Alibertia macrophylla

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Bioactive Metabolites Produced by Penicillium sp.1 and sp.2, Two Endophytes Associated with Alibertia macrophylla (Rubiaceae)

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Influência de diferentes tipos de estacas e substratos na propagação assexuada de hortênsia [Hydrangea macrophylla (Thunb.) Ser.]

A hortênsia (Hydrangea macrophylla) é um arbusto semilenhoso de 1,0 a 2,5 m de altura, de folhagem e florescimento decorativos, muito utilizados como flor de vaso e planta para paisagismo. Conduziu-se este trabalho com o objetivo de estudar o enraizamento de estacas de três partes da planta: apical, mediana e basal; em três tipos de substratos: terra, areia e vermiculita, para a formação de mudas. As estacas foram retiradas das plantas matrizes e divididas em segmentos apical, mediano e basal, os quais foram colocados para enraizar em bandejas de isopor, nos substratos areia, terra e vermiculita, em estufa com nebulização. As estacas que apresentaram melhor qualidade de raízes foram as originadas da parte basal do ramo, sendo que o melhor enraizamento foi observado nas estacas colocadas em areia. As estacas obtidas de diferentes partes da planta não se diferenciaram quanto à porcentagem de enraizamento e quanto ao número de brotos formados. Já os substratos que proporcionaram o maior número de brotações foram a areia e a terra. Algumas estacas apresentaram formação de flores, ocorrendo com maior freqüência nas estacas apicais, sem efeito dos substratos. A areia foi o substrato que proporcionou os melhores resultados quanto à qualidade das raízes e porcentagem de enraizamento. O substrato terra foi superior apenas para o número de brotos por estaca, porém não diferenciou estatisticamente da areia. Mudas formadas de estaca da parte basal da planta se mostraram com qualidade superior.