Phase transitions and nonlinear phenomena in neuronal network models

Communication and cooperation between billions of neurons underlie the power of the brain. How do complex functions of the brain arise from its cellular constituents? How do groups of neurons self-organize into patterns of activity? These are crucial questions in neuroscience. In order to answer them, it is necessary to have solid theoretical understanding of how single neurons communicate at the microscopic level, and how cooperative activity emerges. In this thesis we aim to understand how complex collective phenomena can arise in a simple model of neuronal networks. We use a model with balanced excitation and inhibition and complex network architecture, and we develop analytical and numerical methods for describing its neuronal dynamics. We study how interaction between neurons generates various collective phenomena, such as spontaneous appearance of network oscillations and seizures, and early warnings of these transitions in neuronal networks. Within our model, we show that phase transitions separate various dynamical regimes, and we investigate the corresponding bifurcations and critical phenomena. It permits us to suggest a qualitative explanation of the Berger effect, and to investigate phenomena such as avalanches, band-pass filter, and stochastic resonance. The role of modular structure in the detection of weak signals is also discussed. Moreover, we find nonlinear excitations that can describe paroxysmal spikes observed in electroencephalograms from epileptic brains. It allows us to propose a method to predict epileptic seizures. Memory and learning are key functions of the brain. There are evidences that these processes result from dynamical changes in the structure of the brain. At the microscopic level, synaptic connections are plastic and are modified according to the dynamics of neurons. Thus, we generalize our cortical model to take into account synaptic plasticity and we show that the repertoire of dynamical regimes becomes richer. In particular, we find mixed-mode oscillations and a chaotic regime in neuronal network dynamics.

Relating bisimulations with attractors in boolean network models

When studying a biological regulatory network, it is usual to use boolean network models. In these models, boolean variables represent the behavior of each component of the biological system. Taking in account that the size of these state transition models grows exponentially along with the number of components considered, it becomes important to have tools to minimize such models. In this paper, we relate bisimulations, which are relations used in the study of automata (general state transition models) with attractors, which are an important feature of biological boolean models. Hence, we support the idea that bisimulations can be important tools in the study some main features of boolean network models.We also discuss the differences between using this approach and other well-known methodologies to study this kind of systems and we illustrate it with some examples.

Rural engineering infrastructures design and public facility locations

O desenvolvimento das redes de estradas rurais, especialmente em áreas montanhosas, é a intervenção chave para melhorar a acessibilidade às localidades e aos serviços públicos, cobrindo o maior número de localidades e de serviços públicos, otimizando os escassos recursos disponíveis em países em desenvolvimento. Este estudo explora diferentes modelos de organização de redes de estradas rurais considerando a construção de novas ligações ou o melhoramento de estradas existentes. Um método, baseado na cobertura da rede de estradas rurais, é utilizado para identificar os pontos nodais que formam a rede rural base numa específica região, a qual cobrirá um conjunto dos serviços públicos e de localidades. O modelo assenta numa rede rural de estradas típica ("backbone" e "branch") das regiões montanhosas do Nepal. Os modelos propostos fornecem um conjunto de possibilidades de ligações a estabelecer ou a melhorar e oferece soluções para diferentes níveis de orçamento, que otimizam os custos de transporte na rede, considerando diferentes tipos de pavimento (em solo, granular ou asfáltico). Foi realizado separadamente um modelo dedicado a análises multi-objetivo para resolver problemas de melhoramento de ligações dentro da rede considerando dois objectivos, minimizar os custos de operação para o utilizador e maximizar a população coberta pela rede de estradas, considerando ligações pavimentadas e não pavimentadas (em solo, granular ou asfáltico) dentro de um determinado limite orçamental. O modelo dá ao decisor (DM) diferentes alternativas eficientes para que este possa tomar uma decisão final. Estes modelos, desenvolvidos para redes de estradas rurais, são também aplicáveis a outras redes de infraestruturas rurais, tais como, de fornecimento de água, de eletricidade e de telecomunicações. A implementação dos modelos nas redes de estradas rurais dos distritos de Gorkha e Lamjung do Nepal permitiu confirmara sua aplicabilidade. Verifica-se que os modelos propostos são mais práticos e realísticos no estudo de soluções de melhoramento e de desenvolvimento de redes de estradas rurais em regiões montanhosas de países em desenvolvimento.

Monitoring sandy shores morphologies by DGPS: a practical tool to generate digital elevation models

The highly dynamic nature of some sandy shores with continuous morphological changes require the development of efficient and accurate methodological strategies for coastal hazard assessment and morphodynamic characterisation. During the past decades, the general methodological approach for the establishment of coastal monitoring programmes was based on photogrammetry or classical geodetic techniques. With the advent of new geodetic techniques, space-based and airborne-based, new methodologies were introduced in coastal monitoring programmes. This paper describes the development of a monitoring prototype that is based on the use of global positioning system (GPS). The prototype has a GPS multiantenna mounted on a fast surveying platform, a land vehicle appropriate for driving in the sand (four-wheel quad). This system was conceived to perform a network of shore profiles in sandy shores stretches (subaerial beach) that extend for several kilometres from which high-precision digital elevation models can be generated. An analysis of the accuracy and precision of some differential GPS kinematic methodologies is presented. The development of an adequate survey methodology is the first step in morphodynamic shore characterisation or in coastal hazard assessment. The sample method and the computational interpolation procedures are important steps for producing reliable three-dimensional surface maps that are real as possible. The quality of several interpolation methods used to generate grids was tested in areas where there were data gaps. The results obtained allow us to conclude that with the developed survey methodology, it is possible to Survey sandy shores stretches, under spatial scales of kilometers, with a vertical accuracy of greater than 0.10 m in the final digital elevation models.