毛白杨（Populus tomentosa）木质素生物合成相关基因分离与木质素合成调节

木质素是植物体中具重要生物功能的次生代谢产物。然而纸浆生产主要是将原料中的木质素与用于造纸的纤维素分离，该工艺过程产生了造纸工业的主要污染废液，并且增加造纸成本。本研究目的在于利用反义RNA技术，在分子水平调节木质素的生物合成，降低中国特有造纸树种毛白杨的木质素含量，培育更适于我国造纸工业的原料树种。以下为本研究已取得的相关研究进展： 1.通过RT-PCR技术，从毛白杨中克隆了木质素生物合成的三个相关酶的cDNAs，它们分别为咖啡酸甲基转移酶(caffeic acid O-methyltransferase，COMT)、咖啡酰CoA甲基转移酶(caffeoyl Co-enzyme A O-methyltransferase，CCoAOMT)及香豆酸：辅酶A连接酶(4-coumarate: CoA ligase，4CL)。序列分析显示了毛白杨这三个基因与杨属中其它种的相应基因cDNA核苷酸序列高度同源。Northern点杂交分析表明，COMT、CCoAOMT及4CL基因在毛白杨正在生长的次生木质部中高水平表达，其表达高峰与树木的木质化进程同步;而在叶与叶柄中，这三个基因均不表达。COMT、CCoAOMT及4CL是木质素生物合成的相关酶，该表达特征与其基因功能相一致。本研究克隆的COMT、CCoAOMT及4CL基因的cDNAs已在GenBank注册登记，接受号分别为AF237777、AF240466、AF314180 (publish on Jan l,2002)。 2.通过一系列的DNA重组，构建了携带反义COMT、CCoAOMT或4CLcDNA的反义表达载体以及同时整合反义COMT与CCoAOMT cDNA的双价反义表达载体，PCR扩增与酶切检测确证构建无误。 3.以田间取材的速生三倍体毛白杨B19、B331及B304的茎尖、叶片与嫩茎为外殖体，首次获得了三倍体毛白杨的组培再生试管苗，并建立了速生三倍体毛白杨的组培再生系统，为通过基因工程改良其造纸性能奠定了基础。 4.农杆菌介导转化烟草，PCR与PCR-Southern检测表明我们获得了整合反义COMT、CCoAOMT cDNA及反义COMT及CCoAOMT cDNA共整合的转基因烟草。以Digoxigenin标记的对应于反义链的单链RNA为探针与转基因烟草的总RNA进行NoIthern点杂交，结果表明整合到其中的反义cDNA均已表达。转基因烟草的木质素分析将有助于对COMT及CCoAOMT两个甲基化酶功能的认识。 5.通过农杆菌介导，将反义CCoAOMT cDNA转入欧洲山杨与银白杨的杂交杨（P tremulaXP.alba）。经PCR，PCR-Southern及Southern检测，确认获得了转基因植株。以Digoxigenin标记的对应于CCoAOMT cDNA反义链的单链RNA为探针与转基因杂交杨总RNA进行Northern点杂交，结果表明整合到其中的反义cDNA已在转录水平表达。测定生长5-6个月的转基因杨树下部茎杆的Klason木质素含量，结果显示其中一个株系的Klason木质素含量比野生型对照下降17.9%，表明抑制杨树内源CCoAOMT基因表达可有效降低转基因植株的木质素含量。

Screening of genes related to ovary development in Chinese shrimp Fenneropenaeus chinensis by suppression subtractive hybridization

The ovary of triploid shrimp Fenneropenaeus chinensis was apparently impaired compared to that of the diploid shrimp at the same age. Therefore triploid shrimp ovary is possible to be taken as a model to understand the mechanism of ovary development of shrimp compared to that of the ovary of diploid shrimp at the same age. In the present study, a suppression subtractive hybridization (SSH) technique was applied to identify differentially expressed genes in the ovary between diploid and triploid shrimp. For the forward library (RNA from the ovary of triploid shrimp as the tester), 54 genes were identified. For the reverse library (RNA from the ovary of diploid shrimp as the tester), 16 genes were identified. The identified genes encoded proteins with multiple functions, including extracellular matrix components, cytoskeleton, cell growth and death, metabolism, genetic information processing, signal transduction/transport or immunity related proteins. Eleven differentially expressed genes were selected to be confirmed in the ovaries of triploid and diploid shrimp by semi-quantitative RT-PCR. Genes encoding spermatogonial stem-cell renewal factor, cytochrome c oxidase subunits I and II, clottable protein, antimicrobial peptide and transposase showed up-regulated expressions in the ovary of triploid shrimp. Genes encoding tubulin, cellular apoptosis susceptibility protein, farnesoic acid O-methyltransferase, thrombospondin and heat shock protein 90 genes showed higher expressions in the ovary of diploid shrimp. The differential expressions of the above genes are suggested to be related to the ovary development of shrimp. It will provide a new clue to uncover the molecular mechanisms underlying the ovarian development in penaeid shrimp. (C) 2010 Elsevier Inc. All rights reserved.

Molecular characterisation and inductive expression of a fish protein arginine methyltransferase 1 gene in response to virus infection

Protein arginine methyltransferase 1 (PRMT1) is currently thought as an effector to regulate interferon (IFN) signalling. Here Paralichthys olivaceus PRMT1 (PoPRMT1) gene was identified as a vitally induced gene from UV-inactivated Scophthalmus maximus Rhabdovirus (SMRV)-infected flounder embryonic cells (FEC). PoPMRT1 encodes a 341-amino-acid protein that shares the conserved domains including post-I, motif I, II and III. Homology comparisons show that the putative PoPMRT1 protein is the closest to zebrafish PMRT1 and belongs to type I PRMT family (including PRMT1, PRMT2, PRMT3, PRMT4, PRMT6, PRMT8). Expression analyses revealed an extensive distribution of PoPMRT1 in all tested tissues of flounder. In vitro induction of PoPRMT1 was determined in UV-inactivated SMRV-infected FEC cells, and under the same conditions, flounder Mx wash also transcriptionally up-regulated, indicating that an IFN response might be triggered. Additionally, live SMRV infection of flounders induced an increased expression of PoPRMT1 mRNA and protein significantly in spleen, and to a lesser extent in head kidney and intestine. Immunofluorescence analysis revealed a major cyptoplasmic distribution of PoPRMT1 in normal FEC but an obvious increase occurred in nucleus in response to UV-inactivated SMRV. This is the first report on in vitro and in vivo expression of fish PRMT1 by virus infection, suggesting that PoPRMT1 might be implicated in flounder antiviral immune response. (c) 2006 Elsevier Ltd. All rights reserved.

An Amino Acid Substitution Matrix for Protein Conformation Identification

Amino acid substitution matrices play an essential role in protein sequence alignment, a fundamental task in bioinformatics. Most widely used matrices, such as PAM matrices derived from homologous sequences and BLOSUM matrices derived from aligned segments of PROSITE, did not integrate conformation information in their construction. There are a few structure-based matrices, which are derived from limited data of structure alignment. Using databases PDB_SELECT and DSSP, we create a database of sequence-conformation blocks which explicitly represent sequence-structure relationship. Members in a block are identical in conformation and are highly similar in sequence. From this block database, we derive a conformation-specific amino acid substitution matrix CBSM60. The matrix shows an improved performance in conformational segment search and homolog detection.

Preparation And Tribology Studies of Alkyl Carboxylic Acid Monolayer Films on Pei-Coated Glass Substrate

首次在涂敷PEI的玻璃表面上制备了癸酸及全氟癸酸的单分子层膜。研究了成膜机理及摩擦特性。结果表明。脱水剂DCCD促进了癸酸或全氟癸酸与PEI酞胺化的反应。导致两种羧酸在PEI表面产生了靠化学键（酞胺键）连接的稳定的单分子层膜,摩擦、磨损实验表明。单分子层有机膜的摩擦特性受膜的组成、表面能及有序性和堆积密度的重要影响。表面能越低,有序性和堆积密度越高。摩擦系数越低。与碳氢化合物相比。碳氟化合物形成的有序膜具有更高的强度和抗磨性能。

Preparation and Tribological Studies of Stearic Acid Self-Assembled Monolayers on Polymer-Coated Silicon Surface

We present a good alternative method to improve the tribological properties of polymer films by chemisorbing a long-chain monolayer on the functional polymer surface. Thus, a novel self-assembled monolayer is successfully prepared on a silicon substrate coated with amino-group-containing polyethyleneimine (PEI) by the chemical adsorption of stearic acid (STA) molecules. The formation and structure of the STA-PEI film are characterized by means of contact-angle measurement and ellipsometric thickness measurement, and of Fourier transformation infrared spectrometric and atomic force microscopic analyses. The micro- and macro-tribological properties of the STA-PEI film are investigated on an atomic force microscope (AFM) and a unidirectional tribometer, respectively. It has been found that the STA monolayer about 2.1-nm thick is produced on the PEI coating by the chemical reaction between the amino groups in the PEI and the carboxyl group in the STA molecules to form a covalent amide bond in the presence of N,N'-dicyclohexylcarbodiimide (DCCD) as a dehydrating regent. By introducing the STA monolayer, the hydrophilic PEI polymer surface becomes hydrophobic with a water contact angle to be about 105degrees. Study of the time dependence of the film formation shows that the adsorption of PEI is fast, whereas at least 24 h is needed to generate the saturated STA monolayer. Whereas the PEI coating has relatively high adhesion, friction, and poor anti-wear ability, the STA-PEI film possesses good adhesive resistance and high load-carrying capacity and anti-wear ability, which could be attributed to the chemical structure of the STA-PEI thin film. It is assumed that the hydrogen bonds between the molecules of the STA-PEI film act to stabilize the film and can be restored after breaking during sliding. Thus, the self-assembled STA-PEI thin film might find promising application in the lubrication of micro-electromechanical systems (MEMS).

Effects of Molecular Length, Ortientation and Amino Acid Mutation on Kinetics of Selectin/Ligand interactions

Receptor/ligand interactions are basic issues to cell adhesion, which are important to many physiological and pathological processes such as lymphocyte-mediated cytotoxicity, tumor metastasis and inflammatory reactionl. Selectin/carbohydrate ligand bindings have been found to mediate the fast rolling of leukocytes on activated endothelial monolayer. Kinetic rate and binding affinity constants are essential determinants of cell adhesion...