Analysis of expressed sequence tags of a marine red alga, Gracilaria lemaneiformis

The expressed sequence tags (EST) has been proved to be a useful tool for discovering and identifying functional genes, especially in some species whose genetic information is unavailable. A total of 180 ESTs have been generated from a cDNA library of gametophytic Gracilaria lemaneiformis in this study. These clones are clustered into 151 groups, among which 8 groups are highly homologous to chloroplast genes and are abundant in the library. After searching for matches in the EST database of red alga, 22 groups are found to match with the registered ESTs of Rhadophyta and 6 with Gracilaria. Searching in the protein database reveal that 73 non-redundant clones have significant similarity to some known sequences, the majority of which are involved in photosynthesis, DNA transcription or translation, and 6, 4 and 3 clones are associated with growth or development, signal transduction and stress or defense response, respectively.

Biological effect of R-phycoerythrin-mediated photosensitization on DNA.

R-phycoerythrin (R-PE) is one of important proteins involved in capturing light during photosynthesis in red algae, and it is highly fluorescent, and water-soluble chromophores. In vivo, it can transfer the light energy into photosynthetic center, however, it can deliver the captured light energy captured to the surrounding oxygen in vitro and produce reactive oxygen species such as singlet oxygen, which is toxic to tumor cells. R-PE was added to the culture medium of tumor cells, subsequently with irradiation of 488 nm, Argon laser of 25.6 J/cm(2). The result by MTT assay showed that the survival rate decreased with the increase of R-PE concentration from 1 to 100 mg/L. The result from H-3-TdR incorporation demonstrated that the synthesis of DNA reduced when the concentration of R-PE increased from 0.01 to 0.32 mg/L. Besides, pUC18 DNA showed a conversion from supercoiled into linear conformation. The conclusion comes that R-PE mediated PDT can influence the conformation of DNA, and it may be one of the mechanisms of R-PE mediated photodynamic therapy.

Assessment of calcareous alga Corallina pilulifera as elemental provider

Calcareous algae such as Corallina pilulifera a Postels et Ruprecht can be one of the most potential candidates to be used in biological carbon dioxide assimilation to reduce greenhouse effect because of its calcification capacity as well as photosynthesis if utilized extensively and properly. The major elemental composition in C. pilulifera is as follows: sodium 0.13%, chloride 1.75%, magnesium 4.37%, calcium 18.4%, iron 0.31%, and carbonate 28.5%. Calcareous algae can be used as elemental provider for livestock or agriculture. (C) 1999 Elsevier Science Ltd. All rights reserved.

Translocation of assimilates in Undaria and its cultivation in China

Undaria cultivation on a commercial scale began in China only in the last decade. Today, Undaria pinnatifida is the main species under cultivation concentrated in two provinces, Liaoning and Shandong. The annual production in the early nineties was 8000-13 000 tons dry weight, which is two or three times the pre-1980 figures. The raft cultivation method maintaining the alga at the desired depths generally ensures the light saturated rate of photosynthesis on clear days, and enhances production. Under the cultivated condition, the calculated annual primary productivity of this alga is 160 g C m(-2) y(-1). Translocation of C-14-labelled photoassimilates in rapidly growing sporophyte of Undaria pinnatifida was studied in the open sea. Samples from different parts of the blade with counterparts exposed to tracer ((NaHCO3)-C-14) showed that the translocation that occurred mainly from the tip of the blade to the growing region had obvious source-sink relationship. It took 20 minutes to translocate the labelled photoassimilates from the epidermis, via cortex, to the medulla of the midrib, where rates of translocation averaging 42-48 cm h(-1) were observed in the open sea. Production experiments of tip-cutting of the blades showed an increased production of 9%.

SOME ASPECTS OF THE GROWTH OF GRACILARIA-TENUISITIPITATA IN POND CULTURE

The effect of temperature, salinity, nitrogen, culture density and depth on the growth of Gracilaria tenuistipitata were investigated between April 1985 and March 1986 in outdoor ponds in Guangxi Province, South China. The mean annual growth rate was 2.4% per day. Under favourable temperatures of 20-30-degrees-C, daily growth rate may reach as high as 3.3%. Salinity had an obvious effect on growth and photosynthesis and growth peaked at 21 parts per thousand, with a broad plateau between 7-27 parts per thousand. Growth experiments showed that a total nitrogen (NH4-N plus NO3-N) concentration of 4 muM was sufficient to enable the plants to maintain a daily growth rate of 2.7%. The best growth of the plant was obtained at a culture density of 0.5-1 kg M-2 and a culture depth of 30 cm in the pond.

Influence of albumen on aggregation and O-2 evolution of protoplasm from Bryopsis hypnoides Lamourou

The extruded protoplasm from the coenocytic green alga, Bryopsis hypnoides Lamouroux, was able to reform a cell wall and develop further into a mature alga in seawater. In this paper, the influence of albumen on the ability of aggregation and on the photosynthesis of protoplasm was examined. Results show that the protoplasm of B. hypnoides could aggregate in either albumen or chicken egg, which is similar to that in seawater. However unlike in seawater, the aggregation from B. hypnoides in albumen and chicken egg failed to develop into a mature individual. Interestingly, the protoplasm of B. hypnoides could maintain its photosynthetic O-2 evolution in albumen and chicken egg, while the time in chicken egg was longer than that in albumen.

Biosynthesis of fluorescent cyanobacterial allophycocyanin trimer in Escherichia coli

Allophycocyanin (APC), a cyanobacterial photosynthetic phycobiliprotein, functions in energy transfer as a light-harvesting protein. One of the prominent spectroscopic characteristics of APC is a strong red-shift in the absorption and emission maxima when monomers are assembled into a trimer. Previously, holo-APC alpha and beta subunits (holo-ApcA and ApcB) were successfully synthesized in Escherichia coli. In this study, both holo-subunits from Synechocystis sp. PCC 6803 were co-expressed in E. coli, and found to self-assemble into trimers. The recombinant APC trimer was purified by metal affinity and size-exclusion chromatography, and had a native structure identical to native APC, as determined by characteristic spectroscopic measurements, fluorescence quantum yield, tryptic digestion analysis, and molecular weight measurements. Combined with results from a study in which only the monomer was formed, our results indicate that bilin synthesis and the subsequent attachment to apo-subunits are important for the successful assembly of APC trimers. This is the first study to report on the assembly of recombinant ApcA and ApcB into a trimer with native structure. Our study provides a promising method for producing better fluorescent tags, as well as a method to facilitate the genetic analysis of APC trimer assembly and biological function.

Characterizing a monotopic membrane enzyme. Biochemical, enzymatic and crystallization studies on Aquifex aeolicus sulfide:quinone oxidoreductase

Monotopic membrane proteins are membrane proteins that interact with only one leaflet of the lipid bilayer and do not possess transmembrane spanning segments. They are endowed with important physiological functions but until now only few of them have been studied. Here we present a detailed biochemical, enzymatic and crystallographic characterization of the monotopic membrane protein sulfide:quinone oxidoreductase. Sulfide:quinone oxidoreductase is a ubiquitous enzyme involved in sulfide detoxification, in sulfide-dependent respiration and photosynthesis, and in heavy metal tolerance. It may also play a crucial role in mammals, including humans, because sulfide acts as a neurotransmitter in these organisms. We isolated and purified sulfide:quinone oxidoreductase from the native membranes of the hyperthermophilic bacterium Aquifex aeolicus. We studied the pure and solubilized enzyme by denaturing and non-denaturing polyacrylamide electrophoresis, size-exclusion chromatography, cross-linking, analytical ultracentrifugation, visible and ultraviolet spectroscopy, mass spectrometry and electron microscopy. Additionally, we report the characterization of its enzymatic activity before and after crystallization. Finally, we discuss the crystallization of sulfide:quinone oxidoreductase in respect to its membrane topology and we propose a classification of monotopic membrane protein crystal lattices. Our data support and complement an earlier description of the three-dimensional structure of A. aeolicus sulfide:quinone oxidoreductase (M. Marcia, U. Ermler, G. Peng, H. Michel, Proc Natl Acad Sci USA, 106 (2009) 9625-9630) and may serve as a reference for further studies on monotopic membrane proteins. (C) 2010 Elsevier B.V. All rights reserved.

Optimization of conditions for tetraspore release and assessment of photosynthetic activities for different generation branches of Gracilaria lemaneiformis Bory

Gracilaria lemaneiformis Bory is an economically important alga that is primarily used for agar production. Although tetraspores are ideal seeds for the cultivation of G. lemaneiformis, the most popular culture method is currently based on vegetative fragments, which is labor-intensive and time-consuming. In this study, we optimized the conditions for tetraspore release and evaluated the photosynthetic activities of different colonies formed from the branches of G. lemaneiformis using a PAM (pulse-amplitude-modulated) measuring system. The results showed that variations in temperature and salinityhad significant effects on tetraspore yield. However, variations in the photon flux density (from 15 mu mol m(-2) s(-1) to 480 mu mol m(-2) s(-1)) had no apparent effect on tetraspore yield. Moreover, the PAM-parameters Y(I), Y(II), ETR(I), ETR(II) and F (v)/F (m) of colonies formed from different branches showed the same trend: parameter values of first generation branches > second generation branches > third generation branches. These results suggest that the photosynthetic activities of different colonies of branches changed with the same trend. Furthermore, photosynthesis in G. lemaneiformis was found to be involved in vegetative reproduction and tetraspore formation. Finally, the first generation branches grew slowly, but accumulated organic compounds to form large numbers of tetraspores. Taken together, these results showed that the first generation branches are ideal materials for the release of tetraspores.

Photosynthetic performance of regenerated protoplasts from disintegrated cells of Bryopsis hypnoides (Chlorophyta)

The photosynthetic performances of regenerated protoplasts of Bryopsis hypnoides, which were incubated in seawater for 1, 6, 12, and 24 h, were studied using chlorophyll (Chl) fluorescence and oxygen measurements. Results showed that for the regenerated protoplasts, the pigment content, the ratios of photosynthetic rate to respiration rate, the maximal photosystem II (PSII) quantum yield (F-v/F-m), and the effective PSII quantum yield (I broken vertical bar(PSII)) decreased gradually along with the regeneration progress, indicated that during 24 h of regeneration there was a remarkable reduction in PSII activity of those newly formed protoplasts. We assumed that during the cultivation progress the regenerated protoplasts had different photosynthetic vigor, with only some of them able to germinate and develop into mature thalli. The above results only reflected the photosynthetic features of the regenerated protoplasts at each time point as a whole, rather than the actual photosynthetic activity of individual aggregations. Further investigation suggested a relationship between the size of regenerated protoplasts and their viability. The results showed that the middle-sized group (diameter 20-60 mu m) retained the largest number of protoplasts for 24 h of growth. The changes in F-v/F-m and I broken vertical bar(PSII) of the four groups of differently sized protoplasts (i.e. < 20, 20-60, 60-100, and > 100 mu m) revealed that the protoplasts 20-60 mu m in diameter had the highest potential activity of the photosynthetic light energy absorption and conversion for several hours.

雨生红球藻Rubisco在虾青素积累过程中的表达分析

虾青素因其具有极强的抗氧化性及优越的着色作用，被广泛应用于营养保健和水产养殖中，备受国内外研究者的关注。红球藻是目前虾青素的生物来源中较有优势的一条途径。 我们选取雨生红球藻作为研究材料，收集其生长过程中四个不同的阶段，分别为绿色游动细胞阶段，绿色不动细胞阶段，绿褐色不动细胞阶段（开始积累虾青素），以及红色不动孢子阶段。本研究中提取了核酮糖-1,5-二磷酸羧化/加氧酶（Rubisco）的粗提液，并测定了酶活。其编码基因rbcL的mRNA表达量也被测定。另外，光合速率与呼吸速率的比值（P/R）通过测定与计算得出，各个阶段藻细胞中虾青素的含量由分析得出。本研究还应用了叶绿素荧光测定方法，确定了光系统II潜在最大活性（Fv / Fm），光系统II实际活性（ΦPSII），电子传递速率（ETR）和非光化学淬灭参数（NPQ）。 结果表明，绿色游动细胞的生长状态最佳，其P/R、Fv / Fm、ΦPSII均为最大，NPQ为最小。这说明在此状态的细胞中，光系统II的活性最强；但是其Rubisco活性与rbcL表达量均为最小。相比之下，在绿褐色不动细胞中，P/R和NPQ的值较低，Fv / Fm、ΦPSII和ETR值都最小，但Rubisco活性与rbcL表达量均为最高。 结合工业生产虾青素的方法，我们认为，Rubisco或许参与了虾青素的合成，而非Calvin循环为色素合成提供前体和能量。因此，在生产过程中适当加入碳源，比如CO2，可以有效增大虾青素的产量。

中国近海浮游植物光合作用研究——初级生产力模型计算与活体叶绿素荧光测量

本文的研究内容是初级生产力模型计算方法以及活体叶绿素荧光测量方法在我国近海浮游植物光合作用研究中的应用。 论文对在我国近海实测的1321 组叶绿素垂直分布数据以及84 组初级生产力数据进行了非线性拟合分析，得出了描述叶绿素和初级生产力垂直变化规律的相应参数。结合光合参数——初始斜率α 的平面分布将我国近海分为9 个光合作用特征相对独立的分区。以光强和遥感叶绿素为输入变量，以各分区实测参数的平均值为模型参数，首次建立了分海区的时间－深度积分初级生产力计算模型。 对拟合参数的分析表明：我国近海深水叶绿素峰（DCM）在夏季最明显而在冬季则不明显，这与夏季温跃层的形成和冬季温跃层消失的规律相符合。最大光合速率参数主要受温度和营养盐状况的影响，但整体而言各个季节的变化不大。光合作用初始斜率参数主要受浮游植物光照条件和光照历史的影响，从春季到冬季持续增加，基本与光照强度的变化刚好相反。光抑制参数反映着浮游植物对高光强伤害的敏感性，它在夏、秋季较低而在冬季较高。 模型计算结果表明我国近海初级生产力规模约为6.4±1.0×108tC/a。总体来说我国近海海域初级生产力北方高于南方，西部高于东部。北方初级生产力高峰期大都出现在夏季而南方出现在冬季，中部则高峰期出现在春秋两季，与温跃层出现和消失的规律有一定的相关性。与由实测生产力推算的初级生产力相比，本模型的计算结果较高，误差产生的原因包括二类水体遥感叶绿素浓度偏高、地形因素等。与VGPM相比较，本模型的计算结果更接近于实测结果。模型中云覆盖度参数的变化可能引起计算结果约25％的变化，当取云覆盖度参数为0.5 时的计算结果与用实际天气状况数据的计算结果较为接近。制作了基于分区模型的水柱初级生产力计算软件，可在仅测量叶绿素浓度的情况下进行水柱初级生产力的计算。 模型准确度的进一步提高的途径主要包括实测参数数量的增加以及遥感叶绿素浓度准确性的提高。 与初级生产力相比，活体叶绿素荧光测量可以更快速、简便地跟踪浮游植光合作用动态。本研究首次将活体叶绿素荧光测量方法应用于野外浮游植物光合作用状态研究。通过暗驰豫实验，建立了使用OS5－AFM藻类荧光仪现场测定活体叶绿素荧光参数——Fv/Fm（光化学效率）的操作方法，并对胶州湾海域浮游植物光化学效率进行了高时空分辨率的调查，对相关因素进行了分析，并尝试通过Fv/Fm进行初级生产力计算。 结果表明，胶州湾海域表层Fv/Fm值的全年平均值约0.37，处于中等偏低水平。Fv/Fm值在秋季最高而春季最低，其平面分布在夏季较均匀而在春季则有较大的区域差异。湾东部Fv/Fm值变化幅度较大，一年中有4 个高峰期；而湾西部Fv/Fm值变化幅度较小，一年中有3 个高峰期。光合作用最活跃的海区随季节更替而变化，其年变化模式可能具有一定的重复性。不同深度上Fv/Fm值的海区平均值没有显著差异，但底层Fv/Fm值的空间差异较小。 通过对营养盐和Fv/Fm值时间变化的分析，首次发现了自然水体中Fv/Fm值变化对氮盐浓度变化响应的滞后效应，在不同的站点，影响Fv/Fm值的氮盐种类有所不同，湾西部海域与NH4+相关性较高而湾东部海域与NO3-的相关性较高，P、Si等则与Fv/Fm值基本无相关性。滞后期的长度并不稳定，1 旬和2 旬的滞后现象都可观察到。Fv/Fm值变化率与氮盐浓度变化率之间的相关性高于Fv/Fm值与氮盐浓度之间的相关性。这表明即使在胶州湾这样无机氮浓度很高、浮游植物生长基本不受氮源限制的水体，氮源浓度的变化仍然影响着浮游植物的光合作用状态。 初步建立了由Fv/Fm测量结果计算初级生产力的方法。模型的计算结果与文献资料中胶州湾水域初级生产力的时空分布趋势基本一致，但在数量上明显低于传统估算的结果。获得更多同步测量的初级生产力和Fv/Fm值数据可逐渐改善这一方法计算结果的准确性，并可籍次方法更快更方便地进行初级生产力的测算。

几种海藻的发育和光合作用

本文以紫菜、海带和裙带菜等为材料，研究了海藻自由生活繁殖细胞生长发育的光温条件，以此为基础，采用生物工程中的固定化细胞方法对丝状体阶段的细胞生长发育进行了人工调控，并对其进行扫描电镜观察和光合作用机制进行研究，发现紫菜个体发育和光合作用间有相关性。在此基础上，进一步探讨了海藻个体发育和以原生质体为单位的营养分化与光合作用之间的关系。结果表明，海藻的个体发育与光合作用是相互影响的，孢子体和配子体的光合作用存在本质差异，这种差异与环境因素有关，光质起非常重要的作用；同时生物体自身因素调节必不可少。

红毛菜发育过程及其生理基础

红毛菜（Bangia Lyngb.）属于红藻门，与紫菜属同属红毛菜科，其味道和营养都优于紫菜。目前红毛菜栽培产业已在我国福建莆田展开，但栽培技术还有待提高。海藻栽培技术的发展和成熟依赖于对其生长发育过程的认识。本研究针对红毛菜发育过程及相关光合生理展开，并初步探讨了一采自山西娘子关泉淡水红毛菜群体（FWB）的系统地位。 色素突变标记的壳孢子萌发特征表明最初两次分裂产生的4细胞决定了完整植株的形态建成。成熟植株，为雌雄异体。雌性生殖器果胞的标志性分化结构为原始受精丝，环境因子是促发原始受精丝发展的外部因素，其膨大程度随受精的延迟而增大。原孢子是主要的无性生殖孢子类型，在不良环境中，藻体也会形成内生孢子或休眠包囊，或者藻体断裂后重新形成完整的植株。 红毛菜的生长发育很大程度上受环境因子的控制。高温不利于配子体的发育，15-20 ºC比较适宜。红毛菜无性繁殖的最适温度-光照组合为20 ºC-8 h，有性繁殖为15 ºC-12h。 不同发育阶段，PSII实际光合效率（Y(II)）与细胞的健康状况以及光合器官完整性及其在细胞内的分布有关，而与细胞的类型关系不大。健康的假根细胞、已分化未成熟的精子以及果孢子细胞均具有很高的Y(II)。色素体由中间位变为围周位，中央大液泡（营养藻丝）和大小纤维囊泡（成熟孢子与精子）的产生，使得细胞Y(II)降低。刚放散的壳孢子Y(II)很低，说明在壳孢子由贝壳基质释放到自由水体过程，光合作用受到一定程度抑制；而2h后，Y(II)开始恢复，rbcL的转录水平非常高，为孢子的萌发储备物质和能量需求。 在失水和低盐胁迫下，藻体均维持较高的Y(II)。干出处理至藻体重量不再变化，复水后Y(II)可回复初始水平。海生红毛菜在100％淡水培养基中（约20ºC）培养7天后，部分雄性藻体依然活着。从而体现了红毛菜位居高潮带的生理优势。 FWB终生行无性繁殖，藻体形态与发生以及染色体数目（4条）与海生群体没有区别。而rbcL-rbcS Spacer序列显示，红毛菜海生群体（无性和有性）具有完全相同的序列，而FWB与它们有5bp差异，但是与欧洲、北美地区的淡水群体仅1bp不同，初步说明所有淡水红毛菜群体具有共同的原始起源。

五种红树植物光合产量模型及对环境因子的响应

以木榄（Bruguiera gymnorriza）、白骨壤（Avicennia marina）、桐花树（Aegiceras corniculata）、秋茄（Kandelia candel）和海漆（Excoecaria agallocha）为对象，以光合作用对环境因子的响应为主线，建立了从叶片水平到群体冠层水平上的光合产量模型，探讨了从器官、个体到群体的光合产量对环境因子响应的定量关系。 将Farquhar提出的单叶片光合作用生理生化模型与气孔导度B-B模型相结合，建立了光合作用－气孔导度耦合模型。模型模拟结果与实际测量结果具有较好的一致性。在温度为25.0℃，光合有效辐射为1000μmol•m-2s-1 的条件下，当外部CO2浓度倍增到720μmol•mol-1时，白骨壤、木榄、桐花树、秋茄、海漆的光合速率分别提高22.56%，17.13%，18.43%，18.63%和18.41%。在大气CO2浓度和光合有效辐射通量密度不变的条件下，光合作用速率对温度的响应呈单峰型曲线，即有一个最适温度，5种红树植物的最适温度值均为26.5℃左右。大气CO2浓度和温度固定不变（分别为350μmol•mol-1和25.0 ℃）时，光合作用对光合有效辐射的响应符合Michaelis-Menten反应曲线，模型在PAR<1800μmol•m-2s-1时模拟精度较高（P<0.01）。 在典型晴天条件下，5种红树植物的光合速率日变化都出现两个极大值（分别在11时和15时左右），中午前后光合速率较低，模型模拟光合速率日变化与实测数值日变化趋势一致。本模型能较好地模拟5种红树植物光合产量以及对环境因子的响应，模拟预测精度较高（P<0.01）。 以Ross和Nilson叶倾角分布模型为基础，分别建立了直接辐射和散射辐射在冠层内传输的子模型。冠层内的消光系数均有明显的日变化，且上午8时之前和下午16时之后随时间变化较大。在典型晴天条件下，单位土地面积日合成干物质总量（折合为CH2O）白骨壤为15.840g•m-2d-1，对于木榄、桐花树、秋茄、海漆其相应的值分别为 22.254 g•m-2d-1， 23.610 g•m-2d-1，24.525 g•m-2d-1和25.996 g•m-2d-1 。