Mitochondrial gene sequences useful for species identification of western North Atlantic Ocean sharks

Molecular-based approaches for shark species identification have been driven largely by issues specific to the fishery. In an effort to establish a more comprehensive identification data set, we investigated DNA sequence variation of a 1.4-kb region from the mitochondrial genome covering partial sequences from the 12S rDNA, 16S rDNA, and the complete valine tRNA from 35 shark species from the Atlantic fishery. Generally, within-species variability was low in relation to interspecific divergence because species haloptypes formed monophyletic groups. Phylogenetic analyses resolved ordinal relationships among Carcharhiniformes and Lamniformes, and revealed support for the families Sphyrnidae and Triakidae (within Carcharhiniformes) and Lamnidae and Alopidae (within Lamniformes). The combination of limited intraspecific variability and sufficient between-species divergence indicates that this locus is suitable for species identification.

Variability in spawning frequency and reproductive development of the narrow-barred Spanish mackerel (Scomberomorus commerson) along the west coast of Australia

The narrow-barred Spanish mackerel (Scomberomorus commerson) is widespread throughout the Indo-West Pacific region. This study describes the reproductive biology of S. commerson along the west coast of Australia, where it is targeted for food consumption and sports fishing. Development of testes occurred at a smaller body size than for ovaries, and more than 90% of males were sexually mature by the minimum legal length of 900 mm TL compared to 50% of females. Females dominated overall catches although sex ratios within daily catches vary considerably and females were rarely caught when spaw n ing. Scomberomorus commerson are seasonally abundant in coastal waters and most of the commercial catch is taken prior to the reproductive season. Spawning occurs between about August and November in the Kimberley region and between October and January in the Pilbara region. No spawning activity was recorded in the more southerly West Coast region, and only in the north Kimberley region were large numbers of fish with spawning gonads collected. Catches dropped to a minimum when spawning began in the Pilbara region, when fish became less abundant in inshore waters and inclement weather conditions limited fishing on still productive offshore reefs. Final maturation and ovulation of oocytes took place within a 24-hour period, and females spawned in the afternoon-evening every three days. A third of these spawning females released batches of eggs on consecutive days. Relationships between length, weight, and batch fecundity are presented.

Maximum likelihood estimation of mortality and growth with individual variability from multiple length-frequency data

We consider estimation of mortality rates and growth parameters from length-frequency data of a fish stock and derive the underlying length distribution of the population and the catch when there is individual variability in the von Bertalanffy growth parameter L∞. The model is flexible enough to accommodate 1) any recruitment pattern as a function of both time and length, 2) length-specific selectivity, and 3) varying fishing effort over time. The maximum likelihood method gives consistent estimates, provided the underlying distribution for individual variation in growth is correctly specified. Simulation results indicate that our method is reasonably robust to violations in the assumptions. The method is applied to tiger prawn data (Penaeus semisulcatus) to obtain estimates of natural and fishing mortality.

An overview of 1000 years of tropical climatic variability from ice cores from the Andes of southern Peru [abstract]

EXTRACT (SEE PDF FOR FULL ABSTRACT): Each summer between 1976 and 1984 research was conducted on the Quelccaya Ice Cap with one central objective, to recover an ice core to bedrock from which an approximate 1000 year climatic history for tropical South America could be reconstructed. In 1983 that central objective was accomplished by recovering one core 155 meters in length containing 1350 years and a second core of 163.6 meters containing more than 1500 years of climatic history. ... The most significant climatic event in tropical South America over the last 1500 years was the "Little Ice Age" which is recorded between 1490 to 1880 A.D. in these ice core records. Records from the summit of the Quelccaya Ice Cap show that during the "Little Ice Age" period there was (1) a general increase in particulates (both insoluble and soluble, starting around 1490 A.D. and ending abruptly in 1880 A.D.; (2) an initial increase in net accumulation (1500-1720 A.D.) followed by a period of decreased net accumulation (1720-1860 A.D.); (3) more negative delta-O-18 values beginning in the 1520's and ending around 1880 A.D. The "Little Ice Age" event is evident as a perturbation in all five ice core parameters.

Hydrologic variability related to El Nino in the Pacific Northwest [abstract]

A preliminary statistical analysis was undertaken to evaluate whether the effect of El Nino events is apparent in variables related to hydrologic behavior. Annual precipitation, temperature and streamflow were used for three locations in Oregon representing coastal, Willamette Valley/Cascade and eastern Oregon regions. The mean and variance for periods of El Nino occurrence vs. those with no El Nino were computed. Numerical differences were observed but were not consistent across all stations. The coastal area showed a decrease in mean precipitation and increase in mean streamflow during El Nino events. Other stations showed a positive increase in mean for both precipitation and streamflow for El Nino events. Variance of precipitation was greater in the coastal area but smaller in other areas and vice versa for streamflow during El Nino events. Statistical analyses indicated no significant differences of means, variances or distributions using nonparametric tests for El Nino vs. non-El Nino series.

High-resolution natural recording systems: intercomparisons of the response to interannual climatic variability [abstract]

The goal of this work is to examine the properties of recording mechanisms which are common to continuously recording high-resolution natural systems in which climatic signals are imprinted and preserved as proxy records. These systems produce seasonal structures as an indirect response to climatic variability over the annual cycle. We compare the proxy records from four different high-resolution systems: the Quelccaya ice cap of the Peruvian Andes; composite tree ring growth from southern California and the southwestern United States; and the marine varve sedimentation systems in the Santa Barbara basin (off California, United States) and in the Gulf of California, Mexico. An important focus of this work is to indicate how the interannual climatic signal is recorded in a variety of different natural systems with vastly different recording mechanisms and widely separated in space. These high-resolution records are the products of natural processes which should be comparable, to some degree, to human-engineered systems developed to transmit and record physical quantities. We therefore present a simple analogy of a data recording system as a heuristic model to provide some unifying concepts with which we may better understand the formation of the records. This analogy assumes special significance when we consider that natural proxy records are the principal means to extend our knowledge of climatic variability into the past, beyond the limits of instrumentally recorded data.