Modularity and robustness of bone networks


Autoria(s): VIANA, Matheus Palhares; TANCK, Esther; BELETTI, Marcelo Emilio; COSTA, Luciano da Fontoura
Contribuinte(s)

UNIVERSIDADE DE SÃO PAULO

Data(s)

20/10/2012

20/10/2012

2009

Resumo

Cortical bones, essential for mechanical support and structure in many animals, involve a large number of canals organized in intricate fashion. By using state-of-the art image analysis and computer graphics, the 3D reconstruction of a whole bone (phalange) of a young chicken was obtained and represented in terms of a complex network where each canal was associated to an edge and every confluence of three or more canals yielded a respective node. The representation of the bone canal structure as a complex network has allowed several methods to be applied in order to characterize and analyze the canal system organization and the robustness. First, the distribution of the node degrees (i.e. the number of canals connected to each node) confirmed previous indications that bone canal networks follow a power law, and therefore present some highly connected nodes (hubs). The bone network was also found to be partitioned into communities or modules, i.e. groups of nodes which are more intensely connected to one another than with the rest of the network. We verified that each community exhibited distinct topological properties that are possibly linked with their specific function. In order to better understand the organization of the bone network, its resilience to two types of failures (random attack and cascaded failures) was also quantified comparatively to randomized and regular counterparts. The results indicate that the modular structure improves the robustness of the bone network when compared to a regular network with the same average degree and number of nodes. The effects of disease processes (e. g., osteoporosis) and mutations in genes (e.g., BMP4) that occur at the molecular level can now be investigated at the mesoscopic level by using network based approaches.

Human Frontier Science Program[RGP39/2002]

Human Frontier Science Program

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

FAPESP[99/12765-2]

FAPESP[05/00587-5]

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

FAPESP[07/50882-9]

CNPq[301303/06-1]

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

CNPq[131903/05-5]

CNPq[350058/03-2]

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Netherlands Organisation for Scientific Research (NWO)

NWO-STW[NPG.6778]

Identificador

MOLECULAR BIOSYSTEMS, v.5, n.3, p.255-261, 2009

1742-206X

http://producao.usp.br/handle/BDPI/29739

10.1039/b814188f

http://dx.doi.org/10.1039/b814188f

Idioma(s)

eng

Publicador

ROYAL SOC CHEMISTRY

Relação

Molecular Biosystems

Direitos

restrictedAccess

Copyright ROYAL SOC CHEMISTRY

Palavras-Chave #COMPLEX NETWORKS #METABOLIC NETWORKS #ORGANIZATION #ADAPTATION #REGULATORS #EFFICIENCY #FRAMEWORK #SYSTEMS #GRAPHS #Biochemistry & Molecular Biology
Tipo

article

original article

publishedVersion