Protein identification pipeline for the homology-driven proteomics
| Contribuinte(s) |
UNIVERSIDADE DE SÃO PAULO |
|---|---|
| Data(s) |
20/10/2012
20/10/2012
2008
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| Resumo |
Homology-driven proteomics is a major tool to characterize proteomes of organisms with unsequenced genomes. This paper addresses practical aspects of automated homology-driven protein identifications by LC-MS/MS on a hybrid LTQ orbitrap mass spectrometer. All essential software elements supporting the presented pipeline are either hosted at the publicly accessible web server, or are available for free download. (C) 2008 Elsevier B.V. All rights reserved. U.S. National Institutes of Health (NIH) NIH NIGMS[1R01GM070986-01A1] |
| Identificador |
JOURNAL OF PROTEOMICS, v.71, n.3, Special Issue, p.346-356, 2008 1874-3919 http://producao.usp.br/handle/BDPI/27694 10.1016/j.jprot.2008.07.003 |
| Idioma(s) |
eng |
| Publicador |
ELSEVIER SCIENCE BV |
| Relação |
Journal of Proteomics |
| Direitos |
restrictedAccess Copyright ELSEVIER SCIENCE BV |
| Palavras-Chave | #MS/MS #De novo sequencing #MS BLAST #Sequence-similarity searches #Insect proteomics #Plant proteomics #MASS-SPECTROMETRY #SEQUENCE DATABASES #LC-MS/MS #PEPTIDE #VALIDATION #ORGANISMS #SEARCHES #DATASETS #GENOMES #GELS #Biochemical Research Methods |
| Tipo |
article original article publishedVersion |
