A novel invariant and sequence comparison for DNA


Autoria(s): Zhang BH; Wang HS; Xu L
Data(s)

2007

Resumo

We consider numerical characterization of DNA primary sequence based on the positions of bases (a, t, c, g) and the pairs of bases X, Y in DNA (X, Y=a, t, c, g). This leads to a representation of DNA by a numerical sequence. Then, we extract a novel invariant (molecular connectivity index) from the derived numerical sequences. The suitable invariant can offer a characterization of DNA primary sequence. Finally, we provide an illustration of its utility by making a comparison between ten DNA sequences belonging to beta-globin gene in different species. The evolutionary relationships of ten species we have revealed in this contribution accord with phylogenetic tree properly.

Identificador

http://ir.ciac.jl.cn/handle/322003/14025

http://www.irgrid.ac.cn/handle/1471x/149787

Idioma(s)

英语

Fonte

Zhang BH;Wang HS;Xu L.A novel invariant and sequence comparison for DNA,CHEMOMETRICS AND INTELLIGENT LABORATORY SYSTEMS,2007 ,87(2):194-199

Palavras-Chave #2-D GRAPHICAL REPRESENTATION #BETA-GLOBIN GENE #NUCLEOTIDE-SEQUENCE #MESSENGER-RNA #EVOLUTIONARY #LOCUS #BASES
Tipo

期刊论文