Bayesian parametric bootstrap for models with intractable likelihoods


Autoria(s): Vo, Brenda N.; Drovandi, Christopher C.; Pettitt, Anthony N.
Data(s)

23/08/2015

Resumo

In this paper it is demonstrated how the Bayesian parametric bootstrap can be adapted to models with intractable likelihoods. The approach is most appealing when the semi-automatic approximate Bayesian computation (ABC) summary statistics are selected. After a pilot run of ABC, the likelihood-free parametric bootstrap approach requires very few model simulations to produce an approximate posterior, which can be a useful approximation in its own right. An alternative is to use this approximation as a proposal distribution in ABC algorithms to make them more efficient. In this paper, the parametric bootstrap approximation is used to form the initial importance distribution for the sequential Monte Carlo and the ABC importance and rejection sampling algorithms. The new approach is illustrated through a simulation study of the univariate g-and- k quantile distribution, and is used to infer parameter values of a stochastic model describing expanding melanoma cell colonies.

Formato

application/pdf

Identificador

http://eprints.qut.edu.au/86986/

Relação

http://eprints.qut.edu.au/86986/1/PB_intractable_likelihoods.pdf

Vo, Brenda N., Drovandi, Christopher C., & Pettitt, Anthony N. (2015) Bayesian parametric bootstrap for models with intractable likelihoods. [Working Paper] (Unpublished)

http://purl.org/au-research/grants/ARC/DP110100159

Direitos

Copyright 2015 QUT & the Authors

Fonte

ARC Centre of Excellence for Mathematical & Statistical Frontiers (ACEMS); School of Mathematical Sciences; Science & Engineering Faculty

Palavras-Chave #010402 Biostatistics #010406 Stochastic Analysis and Modelling #060113 Synthetic Biology #Bayesian bootstrap #Approximate Bayesian computation #sequential Monte Carlo #melanoma cell spreading #importance sampling #quantile distribution
Tipo

Working Paper