On the need for an international effort to capture, share and use crystallization screening data


Autoria(s): Newman, J.; Bolton, E. E.; Müller-Dieckmann, J.; Fazio, V. J.; Gallagher, D. T.; Lovell, D. R.; Luft, J. R.; Peat, T. S.; Ratcliffe, D.; Sayle, R. A.; Snell, E. H.; Taylor, K.; Vallotton, P.; Velanker, S.; Von Delft, F.
Data(s)

2012

Resumo

When crystallization screening is conducted many outcomes are observed but typically the only trial recorded in the literature is the condition that yielded the crystal(s) used for subsequent diffraction studies. The initial hit that was optimized and the results of all the other trials are lost. These missing results contain information that would be useful for an improved general understanding of crystallization. This paper provides a report of a crystallization data exchange (XDX) workshop organized by several international large-scale crystallization screening laboratories to discuss how this information may be captured and utilized. A group that administers a significant fraction of the worlds crystallization screening results was convened, together with chemical and structural data informaticians and computational scientists who specialize in creating and analysing large disparate data sets. The development of a crystallization ontology for the crystallization community was proposed. This paper (by the attendees of the workshop) provides the thoughts and rationale leading to this conclusion. This is brought to the attention of the wider audience of crystallographers so that they are aware of these early efforts and can contribute to the process going forward. © 2012 International Union of Crystallography All rights reserved.

Identificador

http://eprints.qut.edu.au/79863/

Relação

DOI:10.1107/S1744309112002618

Newman, J., Bolton, E. E., Müller-Dieckmann, J., Fazio, V. J., Gallagher, D. T., Lovell, D. R., Luft, J. R., Peat, T. S., Ratcliffe, D., Sayle, R. A., Snell, E. H., Taylor, K., Vallotton, P., Velanker, S., & Von Delft, F. (2012) On the need for an international effort to capture, share and use crystallization screening data. Acta Crystallographica Section F: Structural Biology and Crystallization Communications, 68(3), pp. 253-258.

Fonte

School of Electrical Engineering & Computer Science; Science & Engineering Faculty

Palavras-Chave #030000 CHEMICAL SCIENCE #060000 BIOLOGICAL SCIENCES #crystallization ontology #crystallization screening data #crystallization #factual database #review #X ray crystallography #Crystallography #X-Ray #Databases #Factual
Tipo

Journal Article